View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_low_20 (Length: 419)
Name: NF21562_low_20
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 8316805 - 8316394
Alignment:
| Q |
1 |
tctttccaactccatgcttgagattgaagtaaggagaagtgctctgccaacaaaatttacaaactgctgctcctttttacctgattctattttcatcccg |
100 |
Q |
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| T |
8316805 |
tctttccaactccatgcttgagattgaagtaaggagaagtgctctgccaacaaaatttacaaactgctgctcctttttacctgattctattttcatcccg |
8316706 |
T |
|
| Q |
101 |
ctctcaaaatctatctccacacgcctttcatatacttctgcatcgcgcaaattggctttatgattgccgcaaacatgacaccttggacatacagtcaatt |
200 |
Q |
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| T |
8316705 |
ctctcaaaatctatctccacacgcctttcatatacttctgcatcgcgcaaattggctttatgatttccgcaaacatgacaccttggacatacagtcaatt |
8316606 |
T |
|
| Q |
201 |
tatactgcatccaaaatcatcagagttacttaatttatcatcaatgttttggggtggactatcaaataagataacaagagggagaaaactaaccttatca |
300 |
Q |
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| T |
8316605 |
tatactgcatccaaaatcatcagagttacttaatttatcatcaatgttttggggtggactatcaaataagataacaagagggagaaaactaaccttatca |
8316506 |
T |
|
| Q |
301 |
tagtcatagcaataatcagtgcaaatttcttcacaataagaacacaatggattataattgtatgataaatcaatatcatctaagtcgagcttggtaatgg |
400 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8316505 |
tagtcatagcaataatcagtgcaaatttcttcgcaataagaacacaatggattataattgtatgataaatcaatatcatctaagtcgagcttggtgatgg |
8316406 |
T |
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| Q |
401 |
atgatgtccatc |
412 |
Q |
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| T |
8316405 |
atgatgtccatc |
8316394 |
T |
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