View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_low_28 (Length: 359)
Name: NF21562_low_28
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 10 - 349
Target Start/End: Complemental strand, 47043401 - 47043060
Alignment:
| Q |
10 |
acatcatcagggagccaaaaggagacgtatgttaattgtaatgtgaccatggagagtcgtggcggtggagctaaccaggtgcatgcagacaaataaatag |
109 |
Q |
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| T |
47043401 |
acatcttcagggagccaaaaggagacgtatgttaattgtaatgtgaccatggagagtcgtggcggtggagctaaccaggtgcatgcagacaaataaatag |
47043302 |
T |
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| Q |
110 |
aaaatacagtggcatgcctttaatgatatgaaacttgtgaaatcaaaattttggcatcgaaggtaactatttactatcatattaatttaaatgaaatcaa |
209 |
Q |
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| T |
47043301 |
aaaatacagtggcatgcctttaatgatatgaaacttgtgaaatcaaaatgttggcatcgaaggtcactatttactatcatattaatttaaatgaaatcaa |
47043202 |
T |
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| Q |
210 |
aatttgaagtatt--ctcttattctaaaattgctcaatattatggtctcactttggttttgtttaaaacagaaagcataataaagcaaatgcctttnnnn |
307 |
Q |
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| T |
47043201 |
aatttgaagtattctctcttattctaaaattgctcaatattatggtctcactttggttttgtttaaaacagaaagcataataaagcaaatgcctttaaaa |
47043102 |
T |
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| Q |
308 |
nnntaatgaaaaatcatttgtctaattaattcaatgatgatg |
349 |
Q |
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| T |
47043101 |
aaataatgaaaaatcatttgtctaattaatccaatgatgatg |
47043060 |
T |
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