View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_low_29 (Length: 345)
Name: NF21562_low_29
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 113 - 328
Target Start/End: Original strand, 35761173 - 35761388
Alignment:
| Q |
113 |
actactgttgttgtggttgttgttaatttataacttatatttgaggatattttcaagtttatatattgctcattgcagatgacatgtttcttcgtcgacc |
212 |
Q |
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| T |
35761173 |
actactgttgttgtggttgttgttaatttataacttacatttgaggatattttcaagtttatatattgctcatggcagatgacatgtttcttcgtcgacc |
35761272 |
T |
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| Q |
213 |
aatttcgtaaatggcagaaaaatgttaggtgattgccatgtagtagtgaagttgcttattgaaaacatgtctattttgctggatcaattatgtttctgaa |
312 |
Q |
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| T |
35761273 |
aatttcgtaaatggcagaaaaatgttaggtgattgccatgtagtagtgaagttgcttattgaaaacatgtctattttgctggatcaattatgtttctgaa |
35761372 |
T |
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| Q |
313 |
tattcaaattgatata |
328 |
Q |
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| T |
35761373 |
tattcaaattgatata |
35761388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 35748749 - 35748836
Alignment:
| Q |
21 |
tttgaatttttacactggattccctctctactgtgccagaatgtctcctcgtgtcgtggtattattcttttacctttcttttgttttt |
108 |
Q |
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| T |
35748749 |
tttgaaattttacactggattccctctctattgtgtcaggatttctattggtgtcatggtattattcttttacctttgttttgttttt |
35748836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 35761076 - 35761149
Alignment:
| Q |
44 |
ctctctactgtgccagaatgtctcctcgtgtcgtggtattattcttttacctttcttttgttttttctaactact |
118 |
Q |
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| T |
35761076 |
ctctctattgtgccagaatgtttcctcctgtcgtggtattattctcttacctttgttttg-tttttctaactact |
35761149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 137 - 317
Target Start/End: Complemental strand, 35857985 - 35857808
Alignment:
| Q |
137 |
aatttataacttatatttgaggatattttcaagtttatatattgctcattgcagatgacatgtttcttcgtcgaccaatttcgtaaatggcagaaaaatg |
236 |
Q |
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| T |
35857985 |
aatttaaaatttatatttgagggtattctcagctttatatattgctcatggcagatgctatgtatcttctgcaaccaatttgacaaatgg--gataaacg |
35857888 |
T |
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| Q |
237 |
ttaggtgattgccatgtagtagtgaagttgcttattgaaaacatgtctattttgctggatcaattatgtttctgaatattc |
317 |
Q |
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| T |
35857887 |
tt-gttgatggccaaacagtagtgaagttgcttatggaaaatctgtgtattttgctggatagattttgtttctgaatattc |
35857808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 35749319 - 35749379
Alignment:
| Q |
139 |
tttataacttatatttgaggatattttcaagtttatatattgctcattgcagatgacatgt |
199 |
Q |
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| T |
35749319 |
tttataatttatatttgagggtattctcaagtttttatattgctcgttgcagatggcatgt |
35749379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 35853546 - 35853461
Alignment:
| Q |
20 |
ctttgaatttttacactggattccctctctactgtgccagaatgtctcctcgtgtcgtggtattattcttttacctttcttttgtt |
105 |
Q |
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| T |
35853546 |
ctttgaagttttacactggattccctatctattgtgccaggattactccgcaagtcatagtattattcttttgcctttgttttgtt |
35853461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 35749419 - 35749476
Alignment:
| Q |
239 |
aggtgattgccatgtagtagtgaagttgcttattgaaaacatgtctattttgctggat |
296 |
Q |
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| T |
35749419 |
aggttattgccaagtagcagtgaagttgcttatggaaaatttgtctaatttgctggat |
35749476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 35858129 - 35858044
Alignment:
| Q |
20 |
ctttgaatttttacactggattccctctctactgtgccagaatgtctcctcgtgtcgtggtattattcttttacctttcttttgtt |
105 |
Q |
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| T |
35858129 |
ctttgaagttttacactggattctccgtctattgtgccaggatttttccttgtgtcacggtatttttcttttgcctttgttttgtt |
35858044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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