View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_low_33 (Length: 316)
Name: NF21562_low_33
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_low_33 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 316
Target Start/End: Original strand, 2741324 - 2741632
Alignment:
| Q |
9 |
gagatgaattagtatatgattttctttaagcttgcgtgtaaaacaaatgtttgaatctcatatctaagattccattgaagaaaataagcatttgaaaaat |
108 |
Q |
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| T |
2741324 |
gagatgaattagtatatgattttctttaagcttgtgggtaaaacaaatgtttgaatctcatatctaagatttcatcgaataaaataagcagttgaaaaat |
2741423 |
T |
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| Q |
109 |
aacggaga-catgagctgaaacagagtctgtctgtccctgaagtcggatgttcattccagaggtttgggtgaaatttgggttaatggagtttggatagct |
207 |
Q |
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| T |
2741424 |
agcggagatcatgagctgaaacagagtctgtttgtacctgaagttacatgttcattccagaggtttgagtgaaatttgggttaatggagtttggatagct |
2741523 |
T |
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| Q |
208 |
gatcaatagtgatcattttgatatataaaagtgagagatgatttggtccaaaaatttcaaactttaccaatgaactatgatgtttgttataaaataccag |
307 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||| || | ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2741524 |
gatcaatagtgatcattttgttatataaaagtgagagacgatttagtaacagaatttcaaactttaccaatgaactatgatttttgttataaaataccag |
2741623 |
T |
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| Q |
308 |
tatgcttta |
316 |
Q |
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| T |
2741624 |
tatacttta |
2741632 |
T |
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