View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_low_35 (Length: 301)
Name: NF21562_low_35
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 17986290 - 17986554
Alignment:
| Q |
19 |
cacagatggctcatctacaaacaatcattcagcttgtggagggattttcagagacagtcaagcaaaattccttctttgttttgcagaaaattctggatta |
118 |
Q |
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| T |
17986290 |
cacagatggctcatctacaaacaatcattcagcttgtggagggattttcagagacagtcaagcaaaattccttctttgttttgcagaaaattctggatta |
17986389 |
T |
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| Q |
119 |
ggtaatgcttatcatgctgaactctctggtgcaatgagagctcttgaaattgcagctcaatacaagtggcatactttatagttggaatgtgattctattt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
17986390 |
ggtaatgcttatcatgctgaactctctggtgcaatgagagctcttgaaattgcagctcaataccagtgacatactttatagttggaatgtgattctattt |
17986489 |
T |
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| Q |
219 |
tggtggtaaagctttcattgatcagctccttatcccttggaatcttagaaatagatgggaaaaat |
283 |
Q |
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| T |
17986490 |
tggtggtaaagctttcattgatcagctccttataccttggaatcttagaaacagatgggaaaaat |
17986554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 171 - 283
Target Start/End: Complemental strand, 37332873 - 37332760
Alignment:
| Q |
171 |
cagctcaatacaagtggcatactttatagttggaatgtgattctattttggtggt-aaagctttcattgatcagctccttatcccttggaatcttagaaa |
269 |
Q |
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|||||||| || |||||||| |||||| | |||||||||||||||| |||||||| |||||||||| | ||||||| |||||||||||| |||||||||| |
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| T |
37332873 |
cagctcaacaccagtggcattctttatggctggaatgtgattctatgttggtggttaaagctttcactaatcagcttcttatcccttggtatcttagaaa |
37332774 |
T |
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| Q |
270 |
tagatgggaaaaat |
283 |
Q |
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||||||||||||| |
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| T |
37332773 |
cagatgggaaaaat |
37332760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 15606574 - 15606495
Alignment:
| Q |
92 |
ctttgttttgcagaaaattctggattaggtaatgcttatcatgctgaactctctggtgcaatgagagctcttgaaattgc |
171 |
Q |
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| T |
15606574 |
ctttgctttgcagagaacactggaataggtagcgcttatcatgctgaactttcaggtgcaatgagagcaattgaaattgc |
15606495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 19131644 - 19131726
Alignment:
| Q |
89 |
cttctttgttttgcagaaaattctggattaggtaatgcttatcatgctgaactctctggtgcaatgagagctcttgaaattgc |
171 |
Q |
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| T |
19131644 |
cttctttgctttgcagaaaacactggtattggaagtgcttatcatgctgaactttctggagcaatgagagcaattgaaattgc |
19131726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 20 - 283
Target Start/End: Complemental strand, 20749347 - 20749083
Alignment:
| Q |
20 |
acagatggctcatctacaaacaatcattcagcttgtggagggattttcagagacagtcaagcaaaattccttctttgttttgcagaaaattctggattag |
119 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20749347 |
acagatggctcatctaaaaacaatcattcaacttgtggagggattttcagagacagtcaagcaaaattccttctttgttttgcagaaaattatggattag |
20749248 |
T |
|
| Q |
120 |
gtaatgcttatcatgctgaactctctggtgcaatgagagctcttgaaattgcagctcaatacaagtggcatactttatagttggaatgtgattctatttt |
219 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||| || | |||||| |||||| |||||||| ||||| ||| || |
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| T |
20749247 |
gtaatgcttatcatgctgaactctctggggctatgagagctctcgaaatcgcagctcaacaccaatggcattctttatggttggaatatgattgtatgtt |
20749148 |
T |
|
| Q |
220 |
ggt-ggtaaagctttcattgatcagctccttatcccttggaatcttagaaatagatgggaaaaat |
283 |
Q |
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||| | ||||||||||| | ||||||| |||||||||||| |||||||||| ||||||||||||| |
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| T |
20749147 |
ggtagttaaagctttcactaatcagcttcttatcccttggtatcttagaaacagatgggaaaaat |
20749083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 166
Target Start/End: Complemental strand, 8775150 - 8775035
Alignment:
| Q |
51 |
cttgtggagggattttcagagacagtcaagcaaaattccttctttgttttgcagaaaattctggattaggtaatgcttatcatgctgaactctctggtgc |
150 |
Q |
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|||||||||| || ||| |||| | |||||| |||||||||||||||||||| |||||| |||| ||| |||| ||||| ||||| | |||||||| |
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| T |
8775150 |
cttgtggaggaatattccgagataatcaagccaaattccttctttgttttgctgaaaatactggtccaggaaatgactatcaagctgagttatctggtgc |
8775051 |
T |
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| Q |
151 |
aatgagagctcttgaa |
166 |
Q |
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| T |
8775050 |
aatgagagctattgaa |
8775035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 7803767 - 7803688
Alignment:
| Q |
92 |
ctttgttttgcagaaaattctggattaggtaatgcttatcatgctgaactctctggtgcaatgagagctcttgaaattgc |
171 |
Q |
| |
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||||| |||||||| || ||||| |||||| ||||||||||||||||| || |||||||||||||| |||||||||| |
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| T |
7803767 |
ctttgctttgcagagaacactggaataggtagcgcttatcatgctgaactttcaggtgcaatgagagcaattgaaattgc |
7803688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 22517970 - 22517891
Alignment:
| Q |
81 |
caaaattccttctttgttttgcagaaaattctggattaggtaatgcttatcatgctgaactctctggtgcaatgagagct |
160 |
Q |
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|||||||| |||||||||||||||||||| || ||| || | |||||| |||| |||| ||| ||||||||||||||| |
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| T |
22517970 |
caaaattcattctttgttttgcagaaaatacttaatttggaagtgcttacaatgcagaaccctcaggtgcaatgagagct |
22517891 |
T |
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