View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_low_37 (Length: 286)
Name: NF21562_low_37
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 31951967 - 31951703
Alignment:
| Q |
1 |
aataaggcttcacagatcttagtgttgttcaattggaatcaattataaatatggttaagataataatgaatgtaaataataatttacaaagaatatattg |
100 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
31951967 |
aataaggcttcatagatcttagtgtcgttcaattggaatcaattataaatatggttaagataataatgaatgtaaataataatgtaaaaagaatatattg |
31951868 |
T |
|
| Q |
101 |
aaattgaacgggggattcaaattagaattatgtacataccctcaactacgaaaacaactatcacagaaccaccacacatcagatcaaaggctacccctgc |
200 |
Q |
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|||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31951867 |
aaattgaatgggggattcaagttagaatt-----cataccctcaactacgaaaacaactatcacagaaccaccacacatcagatcaaaggctacccctgc |
31951773 |
T |
|
| Q |
201 |
tacaccacaacactgggtagtgggcgcaacttcagaactcacatatgctgaacaaaaaggcagctaaagg |
270 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31951772 |
tacaccacaacactgggtagtgggcgcaacttcagaactcacatatgctgaacaaaatggcagctaaagg |
31951703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 31950628 - 31950897
Alignment:
| Q |
1 |
aataaggcttcacagatcttagtgttgttcaattggaatcaattataaatatggttaagataataatgaatgtaaataataatttacaaagaatatattg |
100 |
Q |
| |
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||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||| | |||||| || |
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| T |
31950628 |
aataaagcttcacagatcttagtgtcgttcaattggaatcagttataaatatggttaggataataatgaatgtaaataataatgtacacaaaatataatg |
31950727 |
T |
|
| Q |
101 |
aaattgaacgggggattcaaattagaattatgtacataccctcaactacgaaaacaactatcacagaaccaccacacatcagatcaaaggctacccctgc |
200 |
Q |
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| T |
31950728 |
aaattgaagaggggattcaagttagaattatgtacataccctcaactacgacaaaaactatcacagaacaaccacatgtcggatcaaaggctacccctac |
31950827 |
T |
|
| Q |
201 |
tacaccacaacactgggtagtgggcgcaacttcagaactcacatatgctgaacaaaaaggcagctaaagg |
270 |
Q |
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|||||||||||||| ||||||| | ||| ||||| ||||||||||| ||||||||||||||||||||||| |
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|
| T |
31950828 |
tacaccacaacacttggtagtgagtgcagcttcaaaactcacatatactgaacaaaaaggcagctaaagg |
31950897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 3498114 - 3498361
Alignment:
| Q |
1 |
aataaggcttcacagatcttagtgttgttcaattggaatcaatt-ataaatatggttaagataataatgaatgtaaataataatttacaaagaatatatt |
99 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||| | || ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3498114 |
aataaggcttcacagatcttagtgccattcaattgtaattagtttataaatatggttaggataataatgaatgtaaataataatgtacaaagaatatatt |
3498213 |
T |
|
| Q |
100 |
gaaattgaacgggggattcaaattagaattatgtacataccctcaactacgaaaacaactatcacagaaccaccacacatcagatcaaaggctacccctg |
199 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||| | | || |||||||||||||||||| | | |||||||||||||||||| |
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| T |
3498214 |
gaaattga-----ggattcaagttagaattatgtacataccctcaactacaacagcagctatcacagaaccaccacgcgttggatcaaaggctacccctg |
3498308 |
T |
|
| Q |
200 |
ctacaccacaacactgggtagtgggcgcaacttcagaactcacatatgctgaa |
252 |
Q |
| |
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||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| |
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|
| T |
3498309 |
ctacaccacaacactgggtagagggtgcagcttcagaactcacatatgctgaa |
3498361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 3510281 - 3510507
Alignment:
| Q |
1 |
aataaggcttcacagatcttagtgttgttcaattggaatcaattataaatatggttaagataataatgaatgtaaataataatttacaaagaatatattg |
100 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||||||| |||| |||||||||||||| ||||||| | |||||||||||||||| |||||||||||||||| |
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| T |
3510281 |
aataagacttcacagatcttggtgccattcaattggtatcagttataaatatggtttagataatgacgaatgtaaataataatgtacaaagaatatattg |
3510380 |
T |
|
| Q |
101 |
aaattga---acgggggattcaaattagaattatgtacataccctcaactacgaaaacaactatcacagaaccaccacacatcagatcaaaggctacccc |
197 |
Q |
| |
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||||||| ||||| |||| | ||||| || | |||||||||||||| | | || ||||||||||||| ||| || |||| |||||| |||| |
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| T |
3510381 |
aaattgaaggacgggaagatcaagtcagaatcatatgcataccctcaactatcacagcagctatcacagaaccgtcacgagtcggatcgaaggctgcccc |
3510480 |
T |
|
| Q |
198 |
tgctacaccacaacactgggtagtggg |
224 |
Q |
| |
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|||||||||| ||||| ||||||||| |
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| T |
3510481 |
tgctacaccagaacaccaggtagtggg |
3510507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 22927468 - 22927361
Alignment:
| Q |
1 |
aataaggcttcacagatcttagtgttgttcaattggaatcaattataaatatggttaagataataatgaatgtaaataataatttacaaagaatatattg |
100 |
Q |
| |
|
|||||||||||| |||||||| ||| ||||||||||| | ||||| |||||||||| ||||| |||||||||||||||||| ||||||||||||||| |
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| T |
22927468 |
aataaggcttcatagatcttaatgtcattcaattggaaatagttatatatatggttaaaataatgatgaatgtaaataataatgtacaaagaatatatta |
22927369 |
T |
|
| Q |
101 |
aaattgaa |
108 |
Q |
| |
|
||| |||| |
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|
| T |
22927368 |
aaactgaa |
22927361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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