View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21562_low_4 (Length: 624)
Name: NF21562_low_4
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 603
Target Start/End: Complemental strand, 32344556 - 32343977
Alignment:
| Q |
1 |
ttataatttatggcttaataataatacactctttgttctataatatattcgatctctatttaaaaattaatcaaatagtcatatcatcaattgtctttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32344556 |
ttataatttatggcttaataataatacactctttgttctata-----------------ttaaaatttaatcaaatagtcatatcatcaattgtctttca |
32344474 |
T |
|
| Q |
101 |
tataaatcttctatagaaaaggtgataaagtgatagatttaacgatttatttagaatcgaaaatgtaatattgatggttaatattagcaaccatagttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32344473 |
tataaatcttctatagaaaaggtgatgtagtg------ttaa-gatatatttagaatcgaaaatctaatattgatggttaatattagcaaccatagttta |
32344381 |
T |
|
| Q |
201 |
gagacattttaaagttaagtcactaagagacattgaaatattttggttacaaaattcgtccttaaatataaaactttttactatattggttaataaattt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32344380 |
gagacattttaaagttaagtcactaagagacattgaaatattttggttacaaaattcgtccttaaatataaaactttttactatattggttaataaattt |
32344281 |
T |
|
| Q |
301 |
ccctatataccatacggtcctatttataaaccccatcaccatctacaacctgtaaatgggtgccaccaccccaacaaatttaatcacacaatgtagtaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32344280 |
ccctatataccatacggtcctatttataaaccccatcaccatctacaacctgtaaatgggtgccaccaccccaacaaatttaatcacacaatgtagtaat |
32344181 |
T |
|
| Q |
401 |
attactattatccaatgtgtgcatgcatccactatagtttatattcttgtgccatacacattatgtga-tggaccgcatgtcagaaatgtcttgtgaact |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32344180 |
attactattatccaatgtgtgcatgcatccactatagtttatattcttgtgccatacacattatgtgattggaccgcatgtcagaaatgtcttgtgaact |
32344081 |
T |
|
| Q |
500 |
tggtcagagctaggtataatcttaagttttaaccaactatgggggtgcaatatggtcgatatgaatgcgaatgtaccttcacataccatgcatgtgatag |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32344080 |
tggtcagagctaggtataatcttaagttttaaccaactatgggggtgcaatatggtcgatatgaatgcgaatgtaccttcacataccatgcatgtgatag |
32343981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University