View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_low_41 (Length: 271)
Name: NF21562_low_41
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 8088506 - 8088253
Alignment:
| Q |
1 |
atatacaaaatcaatccatggaaaatctagtaaaaggcagccctagagaatccctataaaggtaggtggctacaaagggaggggggagatcccaccattg |
100 |
Q |
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| T |
8088506 |
atatacaaaattaatccatggaaaatctagtaaaaggcagccctagagaatccctataaaggtaggtggctacaaagggagggggt-gatcccaccattg |
8088408 |
T |
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| Q |
101 |
tgaagagtacaaagcaaggctttggccatttttggccaaagtatcagccactaagttgccttctctgagcgcatgagaaaaagagcaattgatctgcttg |
200 |
Q |
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| T |
8088407 |
tgaagagtacaaagcaaggctttggccatttttggccaaagtatcagccactaagttgacttctttgagcgcatgagaaaaagagcaattgatctgcttg |
8088308 |
T |
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| Q |
201 |
cagtaatgcatgcaattatgccatctagcctgcatcctccaagggacaccaacct |
255 |
Q |
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| T |
8088307 |
cagtaatgcatacaattatgccatctagcctgcatcctccaaggcacaccaacct |
8088253 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 25061612 - 25061561
Alignment:
| Q |
90 |
tcccaccattgtgaagagtacaaagcaaggctttggccatttttggccaaag |
141 |
Q |
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| T |
25061612 |
tcccaccattgggaagagtacatagcaaggctttcgccattcttggccaaag |
25061561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 44652424 - 44652485
Alignment:
| Q |
105 |
gagtacaaagcaaggctttggccatttttggccaaagtatcagccactaagttgccttctct |
166 |
Q |
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| T |
44652424 |
gagtacaaagcaagaccttggccattcttagccaaggcatcagccaccaagttgccttctct |
44652485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 787073 - 786993
Alignment:
| Q |
89 |
atcccaccattgtgaagagtacaaagcaaggctttggccatttttggccaaagtatcagccactaagttgccttctctgag |
169 |
Q |
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| T |
787073 |
atcccaccattgagaggagaacatggcaaggctttggccattcttggctaaggcatctgctaccaagttcccttctctgag |
786993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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