View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21562_low_46 (Length: 250)

Name: NF21562_low_46
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21562_low_46
NF21562_low_46
[»] chr4 (11 HSPs)
chr4 (20-237)||(26698050-26698267)
chr4 (1-237)||(4492767-4493002)
chr4 (102-237)||(31160910-31161047)
chr4 (9-101)||(25686601-25686694)
chr4 (26-133)||(7433681-7433788)
chr4 (85-150)||(53146972-53147037)
chr4 (124-194)||(55416911-55416981)
chr4 (85-162)||(48825334-48825411)
chr4 (85-141)||(23636629-23636685)
chr4 (71-149)||(39809817-39809895)
chr4 (39-83)||(2264715-2264759)
[»] chr6 (4 HSPs)
chr6 (35-237)||(12250876-12251078)
chr6 (138-237)||(34703270-34703369)
chr6 (91-147)||(1055718-1055774)
chr6 (1-60)||(34703383-34703443)
[»] chr1 (7 HSPs)
chr1 (35-236)||(33677638-33677839)
chr1 (21-236)||(44962096-44962311)
chr1 (106-185)||(28424493-28424572)
chr1 (20-141)||(21944841-21944962)
chr1 (93-239)||(52243383-52243529)
chr1 (97-184)||(24599019-24599106)
chr1 (103-140)||(41038644-41038681)
[»] chr7 (6 HSPs)
chr7 (27-226)||(6561056-6561255)
chr7 (43-141)||(6560846-6560944)
chr7 (99-190)||(21636227-21636318)
chr7 (91-140)||(23027946-23027995)
chr7 (85-150)||(23688173-23688238)
chr7 (91-194)||(34257601-34257704)
[»] chr2 (7 HSPs)
chr2 (20-225)||(26159580-26159783)
chr2 (138-237)||(27001229-27001328)
chr2 (85-221)||(9145593-9145729)
chr2 (198-244)||(18260517-18260563)
chr2 (94-140)||(34514350-34514396)
chr2 (85-141)||(36781074-36781130)
chr2 (91-140)||(23847944-23847993)
[»] chr3 (2 HSPs)
chr3 (70-226)||(39978286-39978439)
chr3 (121-194)||(3452255-3452328)
[»] chr8 (4 HSPs)
chr8 (85-194)||(30541905-30542014)
chr8 (85-237)||(13334572-13334728)
chr8 (85-150)||(32475579-32475644)
chr8 (100-156)||(12955108-12955164)
[»] chr5 (2 HSPs)
chr5 (85-150)||(27626137-27626202)
chr5 (91-152)||(35562608-35562669)


Alignment Details
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 26698267 - 26698050
Alignment:
Q  20 aaaaaacgatatagtcataatgcaggcacacttaaaatacataaactaagataaattaagtgatgactccgaaacataaaaggggattaagtcaccacat 119  Q
    ||||||||||| || ||||| |||||||| ||||||||| | ||  |||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||    
T  26698267 aaaaaacgataaagccataacgcaggcacgcttaaaataaagaagttaagataaattaagtgataactcccaaacataaaagaggattaagccaccacat 26698168  T
Q  120 atgataattaaaagcaaaattatgatgattttcctttaaccactagaaggtttggagcttaattttatctataaggtggatgattgaattccccttttgt 219  Q
     ||||||||||||||||||||| ||||||||  ||| |||||| |||||| ||| ||||||||||||||||| || ||||||||||||||  ||||||||    
T  26698167 gtgataattaaaagcaaaattaggatgatttggcttcaaccaccagaaggattgaagcttaattttatctatgagttggatgattgaattttccttttgt 26698068  T
Q  220 tgaaaaaatctagcattc 237  Q
    ||||||| ||||||||||    
T  26698067 tgaaaaactctagcattc 26698050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 4492767 - 4493002
Alignment:
Q  1 acatcaggttatcaaaggtaaaaaacgatatagtcataatgcaggcacacttaaaatacataaactaagataaattaagtgatgactccgaaacataaaa 100  Q
    |||||| ||||||||||| |||||||||||||| ||||| | ||||||| |||||||||| || |||||| |||||||||||| ||||| ||||||  ||    
T  4492767 acatcaagttatcaaaggaaaaaaacgatatagccataacgaaggcacatttaaaatacaaaagctaagaaaaattaagtgataactcccaaacatgtaa 4492866  T
Q  101 ggggattaagtcaccacatatgataattaaaagcaaaattatgatgattttcctttaaccactagaaggtttggagcttaattttatctataaggtggat 200  Q
     | || |||| | |||||| ||||||||||||  ||||||| ||||||||  ||| ||| || |||| | ||||| |||||||||||||||||| |||||    
T  4492867 -gagactaagccgccacatgtgataattaaaaataaaattaggatgatttatcttcaactaccagaaagattggatcttaattttatctataagttggat 4492965  T
Q  201 gattgaattccccttttgttgaaaaaatctagcattc 237  Q
     |||| |||   |||||||||||||| | ||||||||    
T  4492966 tattgtatttttcttttgttgaaaaactttagcattc 4493002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 102 - 237
Target Start/End: Original strand, 31160910 - 31161047
Alignment:
Q  102 gggattaagtcaccacatatgataattaaaagcaaaattatgatgattttc--ctttaaccactagaaggtttggagcttaattttatctataaggtgga 199  Q
    ||||||||||||| ||||  | |||||||||||||||||| |||||||| |  ||| |||||| | |||| |||||||||||||||||||||||| ||      
T  31160910 gggattaagtcacaacatggggtaattaaaagcaaaattaggatgatttacaccttcaaccaccataagggttggagcttaattttatctataagttgat 31161009  T
Q  200 tgattgaattccccttttgttgaaaaaatctagcattc 237  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  31161010 tgatagaattccccttttgttgaaaaactctagcattc 31161047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 25686694 - 25686601
Alignment:
Q  9 ttatcaaaggtaaaaaa-cgatatagtcataatgcaggcacacttaaaatacataaactaagataaattaagtgatgactccgaaacataaaag 101  Q
    |||||||||| |||||| ||||| || |||||||||||||| |||||||||||||| |||| |||||||||||||| ||||| |||||||||||    
T  25686694 ttatcaaagggaaaaaagcgataaagccataatgcaggcacgcttaaaatacataagctaatataaattaagtgataactcccaaacataaaag 25686601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 133
Target Start/End: Original strand, 7433681 - 7433788
Alignment:
Q  26 cgatatagtcataatgcaggcacacttaaaatacataaactaagataaattaagtgatgactccgaaacataaaaggggattaagtcaccacatatgata 125  Q
    |||||||| |||||||||||||||||||||||| | || || | |||||||||||||| ||| | |||  ||||||| ||||||| || |||||||||||    
T  7433681 cgatatagccataatgcaggcacacttaaaatatagaagctgaaataaattaagtgataacttccaaatgtaaaaggagattaagccatcacatatgata 7433780  T
Q  126 attaaaag 133  Q
    ||||||||    
T  7433781 attaaaag 7433788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 53146972 - 53147037
Alignment:
Q  85 actccgaaacataaaaggggattaagtcaccacatatgataattaaaagcaaaattatgatgattt 150  Q
    ||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  53146972 actcccaaacataaaagaggattaagccaccacatatggtaattaaaagcaaaattatgatgattt 53147037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 55416981 - 55416911
Alignment:
Q  124 taattaaaagcaaaattatgatgattttcctttaaccactagaaggtttggagcttaattttatctataag 194  Q
    |||||||||||||||||| |||||||| |||| |||||| |||||  ||| ||||||||||||||||||||    
T  55416981 taattaaaagcaaaattaggatgatttgccttcaaccaccagaagaattgtagcttaattttatctataag 55416911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 162
Target Start/End: Original strand, 48825334 - 48825411
Alignment:
Q  85 actccgaaacataaaaggggattaagtcaccacatatgataattaaaagcaaaattatgatgattttcctttaaccac 162  Q
    ||||| |||||||||||||||||||| ||| |||| || ||||||||| |||||||| |||||||| |||| ||||||    
T  48825334 actcccaaacataaaaggggattaagccacgacatgtggtaattaaaaacaaaattaggatgatttgccttcaaccac 48825411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 23636685 - 23636629
Alignment:
Q  85 actccgaaacataaaaggggattaagtcaccacatatgataattaaaagcaaaatta 141  Q
    ||||| |||||||||||| ||||||| |||||||||||||| |||||||||||||||    
T  23636685 actcccaaacataaaaggagattaagccaccacatatgatagttaaaagcaaaatta 23636629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 39809817 - 39809895
Alignment:
Q  71 taaattaagtgatgactccgaaacataaaaggggattaagtcaccacatatgataattaaaagcaaaattatgatgatt 149  Q
    ||||||||||||| ||||  ||| ||||||| | |||||| ||| |||| ||||||||||||| ||||||| |||||||    
T  39809817 taaattaagtgataactctcaaatataaaagagtattaagccacgacatgtgataattaaaagaaaaattaggatgatt 39809895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 2264759 - 2264715
Alignment:
Q  39 atgcaggcacacttaaaatacataaactaagataaattaagtgat 83  Q
    ||||||||||| |||||||||| ||| ||||||||||||||||||    
T  2264759 atgcaggcacatttaaaatacaaaaattaagataaattaagtgat 2264715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 35 - 237
Target Start/End: Complemental strand, 12251078 - 12250876
Alignment:
Q  35 cataatgcaggcacacttaaaatacataaactaagataaattaagtgatgactccgaaacataaaaggggattaagtcaccacatatgataattaaaagc 134  Q
    ||||||||||||||| ||||| ||||||| |||| || ||||||||| | ||||  ||| |||||||||||||||| |||||||| ||||||||||||||    
T  12251078 cataatgcaggcacatttaaagtacataagctaaaatcaattaagtgttaactcttaaatataaaaggggattaagccaccacatgtgataattaaaagc 12250979  T
Q  135 aaaattatgatgattttcctttaaccactagaaggtttggagcttaattttatctataaggtggatgattgaattccccttttgttgaaaaaatctagca 234  Q
    |||||||||||||||| | || ||||||||||||| ||||||||||| |||||||| ||| || ||||||||||||| |||||||||||||| |||||||    
T  12250978 aaaattatgatgatttgctttcaaccactagaaggattggagcttaactttatctaaaagttgaatgattgaattcctcttttgttgaaaaactctagca 12250879  T
Q  235 ttc 237  Q
    |||    
T  12250878 ttc 12250876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 34703369 - 34703270
Alignment:
Q  138 attatgatgattttcctttaaccactagaaggtttggagcttaattttatctataaggtggatgattgaattccccttttgttgaaaaaatctagcattc 237  Q
    ||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||| |||||||| ||| ||||||    
T  34703369 attatgatgatttgccttcaaccactagaaggtttgaagcttaattttatctataagttggatgattgaatttcctttttattgaaaaactcttgcattc 34703270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 1055774 - 1055718
Alignment:
Q  91 aaacataaaaggggattaagtcaccacatatgataattaaaagcaaaattatgatga 147  Q
    ||||| || ||||||||||| |||||||| | ||||||||||||||||||| |||||    
T  1055774 aaacacaagaggggattaagccaccacatgtaataattaaaagcaaaattaggatga 1055718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 34703443 - 34703383
Alignment:
Q  1 acatcaggttatcaaaggtaaaaaa-cgatatagtcataatgcaggcacacttaaaataca 60  Q
    ||||||| ||||||||||||||||| |||||| | | | ||||| ||||||||||||||||    
T  34703443 acatcagattatcaaaggtaaaaaaacgatatggccttgatgcatgcacacttaaaataca 34703383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 35 - 236
Target Start/End: Complemental strand, 33677839 - 33677638
Alignment:
Q  35 cataatgcaggcacacttaaaatacataaactaagataaattaagtgatgactccgaaacataaaaggggattaagtcaccacatatgataattaaaagc 134  Q
    |||||| ||| ||||||||| |||||||| |||| |||||||||||||| |||   ||| |||||||| ||||||| || ||||| ||||||||||||||    
T  33677839 cataatacagtcacacttaagatacataagctaaaataaattaagtgataacttgcaaaaataaaaggagattaagccaacacatgtgataattaaaagc 33677740  T
Q  135 aaaattatgatgattttcctttaaccactagaaggtttggagcttaattttatctataaggtggatgattgaattccccttttgttgaaaaaatctagca 234  Q
    ||||||| ||||||||  ||| ||||| ||||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |||||||    
T  33677739 aaaattaagatgatttgtcttcaaccattagaaggattggagcttaattttatccataagctgaatgattgaattccccttttgttgaaaaactctagca 33677640  T
Q  235 tt 236  Q
    ||    
T  33677639 tt 33677638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 44962311 - 44962096
Alignment:
Q  21 aaaaacgatatagtcataatgcaggcacacttaaaatacataaactaagataaattaagtgatgactccgaaacataaaaggggattaagtcaccacata 120  Q
    |||| ||||| || |||||||||  ||| ||||||||| | || |||||||||||| |||||| ||||  || |||||||||| |||||| |||| |||     
T  44962311 aaaagcgataaagccataatgcaaacacgcttaaaatatagaagctaagataaattgagtgataactcacaatcataaaagggaattaagccaccgcatg 44962212  T
Q  121 tgataattaaaagcaaaattatgatgattttcctttaaccactagaaggtttggagcttaattttatctataaggtggatgattgaattccccttttgtt 220  Q
    ||||||||||||||||||||||||||||||  |||  || |  | |||  |||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  44962211 tgataattaaaagcaaaattatgatgatttatcttcgactatcaaaagaattggagcttaattttatctataagttggatgattgaatttcccttttgtt 44962112  T
Q  221 gaaaaaatctagcatt 236  Q
    |||||| || ||||||    
T  44962111 gaaaaactcaagcatt 44962096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 28424493 - 28424572
Alignment:
Q  106 ttaagtcaccacatatgataattaaaagcaaaattatgatgattttcctttaaccactagaaggtttggagcttaatttt 185  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| || | | ||| |||||||||    
T  28424493 ttaagtcatcacatatgatagttaaaagcaaaattatgatgattttccttcaaccactaaaaaggtcggatcttaatttt 28424572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 21944962 - 21944841
Alignment:
Q  20 aaaaaacgatatagtcataatgcaggcacacttaaaatacataaactaagataaattaagtgatgactccgaaacataaaaggggattaagtcaccacat 119  Q
    ||||||||||| || |||||||  ||||| ||||||||||||||  ||   ||||||||||||| | ||  ||||| |||| ||||||||  ||||||||    
T  21944962 aaaaaacgataaagccataatgttggcacgcttaaaatacataagttattgtaaattaagtgatcattctcaaacaaaaaaagggattaaaccaccacat 21944863  T
Q  120 atgataattaaaagcaaaatta 141  Q
     |||||||||||||||||||||    
T  21944862 gtgataattaaaagcaaaatta 21944841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 239
Target Start/End: Complemental strand, 52243529 - 52243383
Alignment:
Q  93 acataaaaggggattaagtcaccacatatgataattaaaagcaaaattatgatgattttcctttaaccactagaaggtttggagcttaattttatctata 192  Q
    ||||||||||| ||||||| ||||  | || |||||||| | ||||||| |||||||| |||| | |||| |||||| ||||||||||||||| || | |    
T  52243529 acataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattaggatgatttgccttcagccaccagaaggattggagcttaattttgtccaca 52243430  T
Q  193 aggtggatgattgaattccccttttgttgaaaaaatctagcattcat 239  Q
    || ||  | || |||  |||||||||||| |||| ||||||||||||    
T  52243429 agctgattaatagaaagccccttttgttggaaaactctagcattcat 52243383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 24599019 - 24599106
Alignment:
Q  97 aaaaggggattaagtcaccacatatgataattaaaagcaaaattatgatgattttcctttaaccactagaaggtttggagcttaattt 184  Q
    |||||||||| ||| ||||||||||||  |||||||||||||||| | |||||| | || ||||||  ||||| ||| || |||||||    
T  24599019 aaaaggggatgaagccaccacatatgacgattaaaagcaaaattaaggtgatttgcgttgaaccaccggaaggattgaagtttaattt 24599106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 41038644 - 41038681
Alignment:
Q  103 ggattaagtcaccacatatgataattaaaagcaaaatt 140  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  41038644 ggattaagccaccacatatgataactaaaagcaaaatt 41038681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 27 - 226
Target Start/End: Original strand, 6561056 - 6561255
Alignment:
Q  27 gatatagtcataatgcaggcacacttaaaatacataaactaagataaattaagtgatgactccgaaacataaaaggggattaagtcaccacatatgataa 126  Q
    ||||||| ||||||| ||||||  ||||||||||||| |||| |||||||||||||| ||| | ||||||||||| |||||||| |||||||||||||||    
T  6561056 gatatagccataatgtaggcacgtttaaaatacataagctaaaataaattaagtgataacttccaaacataaaagaggattaagccaccacatatgataa 6561155  T
Q  127 ttaaaagcaaaattatgatgattttcctttaaccactagaaggtttggagcttaattttatctataaggtggatgattgaattccccttttgttgaaaaa 226  Q
    ||||||| |||||||  ||||||| |||| |||||| |||||| ||||||||||| ||| || ||||| || |||||||||||||| |||||||||||||    
T  6561156 ttaaaagaaaaattaaaatgatttgccttcaaccaccagaaggattggagcttaactttttcaataagttgaatgattgaattcccattttgttgaaaaa 6561255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 6560944 - 6560846
Alignment:
Q  43 aggcacacttaaaatacataaactaagataaattaagtgatgactccgaaacataaaaggggattaagtcaccacatatgataattaaaagcaaaatta 141  Q
    |||||||||||||| | | || |||| |||||||||||||| |||  |||||||||||| |||||| | ||||| |||||||||||||||  |||||||    
T  6560944 aggcacacttaaaacatagaagctaaaataaattaagtgataactttgaaacataaaagaggattacggcaccatatatgataattaaaacaaaaatta 6560846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 21636227 - 21636318
Alignment:
Q  99 aaggggattaagtcaccacatatgataattaaaagcaaaattatgatgattttcctttaaccactagaaggtttggagcttaattttatcta 190  Q
    |||| |||||||  |||||||||| || ||||||||||||||| | |||||| | ||||||||| | |||| ||| ||||||| ||||||||    
T  21636227 aaggagattaagctaccacatatggtagttaaaagcaaaattaaggtgatttgcttttaaccaccacaaggattgaagcttaaatttatcta 21636318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 23027946 - 23027995
Alignment:
Q  91 aaacataaaaggggattaagtcaccacatatgataattaaaagcaaaatt 140  Q
    ||||||||||| ||| |||| ||||||||||||||||||||| |||||||    
T  23027946 aaacataaaagaggaataagccaccacatatgataattaaaaacaaaatt 23027995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 23688173 - 23688238
Alignment:
Q  85 actccgaaacataaaaggggattaagtcaccacatatgataattaaaagcaaaattatgatgattt 150  Q
    ||||| |||||||||||||||||||| |||||||| ||||||||  ||||||| |||  |||||||    
T  23688173 actcccaaacataaaaggggattaagccaccacatgtgataattgtaagcaaatttagaatgattt 23688238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 194
Target Start/End: Complemental strand, 34257704 - 34257601
Alignment:
Q  91 aaacataaaaggggattaagtcaccacatatgataattaaaagcaaaattatgatgattttcctttaaccactagaaggtttggagcttaattttatcta 190  Q
    ||||||||  ||| || ||| |||||||| ||||||||||||| ||| ||| |||||||| ||||  ||||| |||| |  || ||||||||||| ||||    
T  34257704 aaacataatggggaatcaagccaccacatgtgataattaaaagtaaagttaggatgatttgccttcgaccaccagaacgactgaagcttaattttgtcta 34257605  T
Q  191 taag 194  Q
    ||||    
T  34257604 taag 34257601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 26159580 - 26159783
Alignment:
Q  20 aaaaaacgatatagtcataatgcaggcacacttaaaatacataaactaagataaattaagtgatgactccgaaacataaaaggggattaagtcaccacat 119  Q
    ||||| ||||||||   ||||||| |||| ||||||||| |  | |||| |||||||| ||||| ||||  ||||||||||| |||||||| ||||||||    
T  26159580 aaaaagcgatatagcactaatgcaagcacgcttaaaataga--agctaaaataaattaggtgataactctcaaacataaaagaggattaagccaccacat 26159677  T
Q  120 atgataattaaaagcaaaattatgatgattttcctttaaccactagaaggtttggagcttaattttatctataaggtggatgattgaattccccttttgt 219  Q
     |||||| |||||||||||||| ||||||||  ||| | ||||||||||| ||| |||||||||||||||||||| || || ||||||||  ||||||||    
T  26159678 gtgataactaaaagcaaaattaggatgatttgtcttcagccactagaaggattgaagcttaattttatctataagttgaattattgaattgaccttttgt 26159777  T
Q  220 tgaaaa 225  Q
    ||||||    
T  26159778 tgaaaa 26159783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 27001328 - 27001229
Alignment:
Q  138 attatgatgattttcctttaaccactagaaggtttggagcttaattttatctataaggtggatgattgaattccccttttgttgaaaaaatctagcattc 237  Q
    ||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||| |||||||||||| ||||||    
T  27001328 attatgatgatttgccttcaaccactagaaggtttgaagcttaattttatctataagttggatgattgaatttcctttttattgaaaaaatcttgcattc 27001229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 221
Target Start/End: Complemental strand, 9145729 - 9145593
Alignment:
Q  85 actccgaaacataaaaggggattaagtcaccacatatgataattaaaagcaaaattatgatgattttcctttaaccactagaaggtttggagcttaattt 184  Q
    ||||| ||||||||||| |||||||| |||||  | || |||||||||||||||||| | |||||| |||| |||||| | || | ||||||||||||||    
T  9145729 actcccaaacataaaagaggattaagccaccatttgtgctaattaaaagcaaaattagggtgatttgccttcaaccaccaaaaagattggagcttaattt 9145630  T
Q  185 tatctataaggtggatgattgaattccccttttgttg 221  Q
    |||||| ||| ||  | || ||||||||| |||||||    
T  9145629 tatctagaagctgattaatagaattccccgtttgttg 9145593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 18260517 - 18260563
Alignment:
Q  198 gatgattgaattccccttttgttgaaaaaatctagcattcatctcac 244  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||    
T  18260517 gatgattgaattccccttttgttgaaaaactctagcattcatgtcac 18260563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 34514350 - 34514396
Alignment:
Q  94 cataaaaggggattaagtcaccacatatgataattaaaagcaaaatt 140  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||    
T  34514350 cataaaaggggattaagccaccacatatgatagttaaaagcaaaatt 34514396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 36781130 - 36781074
Alignment:
Q  85 actccgaaacataaaaggggattaagtcaccacatatgataattaaaagcaaaatta 141  Q
    ||||| |||||||| ||||||||||| ||| |||| ||||||||||||| |||||||    
T  36781130 actcccaaacataataggggattaagccactacatgtgataattaaaagtaaaatta 36781074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 23847993 - 23847944
Alignment:
Q  91 aaacataaaaggggattaagtcaccacatatgataattaaaagcaaaatt 140  Q
    ||||||||||| ||||| || ||||||||||| || ||||||||||||||    
T  23847993 aaacataaaagaggatttagccaccacatatggtagttaaaagcaaaatt 23847944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 226
Target Start/End: Complemental strand, 39978439 - 39978286
Alignment:
Q  70 ataaattaagtgatgactccgaaacataaaaggggattaagtcaccacatatgataattaaaagcaaaattatgatgattttcctttaaccactagaagg 169  Q
    |||||||||||||| | ||  |||||||||| |||||||||   ||| || |||||||||||||||||| |||||||| ||  ||| |||||  | ||||    
T  39978439 ataaattaagtgataattctcaaacataaaaagggattaag---ccaaatgtgataattaaaagcaaaaatatgatgagttgtcttcaaccatcaaaagg 39978343  T
Q  170 tttggagcttaattttatctataaggtggatgattgaattccccttttgttgaaaaa 226  Q
     ||||| ||||||||||||||||| ||| ||||||||||||   |||||||||||||    
T  39978342 attggaacttaattttatctataaagtgaatgattgaattctttttttgttgaaaaa 39978286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 3452255 - 3452328
Alignment:
Q  121 tgataattaaaagcaaaattatgatgattttcctttaaccactagaaggtttggagcttaattttatctataag 194  Q
    |||||||||||| |||||||| |||| ||| |||| ||||||||||||| ||| ||||||||||||| ||||||    
T  3452255 tgataattaaaaacaaaattaggatggtttgccttcaaccactagaaggattgtagcttaattttatttataag 3452328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 30542014 - 30541905
Alignment:
Q  85 actccgaaacataaaaggggattaagtcaccacatatgataattaaaagcaaaattatgatgattttcctttaaccactagaaggtttggagcttaattt 184  Q
    ||||| ||| ||| |||||| ||||| |||| ||||||||||||||||||||||||| ||||||||   || |||||| |||||| ||||||||||||||    
T  30542014 actcctaaaaatagaagggggttaagccaccgcatatgataattaaaagcaaaattaggatgatttgttttcaaccacaagaaggattggagcttaattt 30541915  T
Q  185 tatctataag 194  Q
    |  |||||||    
T  30541914 tccctataag 30541905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 237
Target Start/End: Complemental strand, 13334728 - 13334572
Alignment:
Q  85 actccgaaacataaaaggggattaagtcaccacatatgataattaaaagcaaaattatgatgattttcctttaaccactagaaggtttggagcttaattt 184  Q
    ||||| ||||||||||||| |||||| | ||| || ||| |||| |||||||||| | | |||||  |||| |||||| |||| | ||| ||||||||||    
T  13334728 actcccaaacataaaagggaattaagacgccagatgtgacaattgaaagcaaaatgaaggtgattcgccttcaaccaccagaatgattgaagcttaattt 13334629  T
Q  185 tatctataaggtggatgattgaattccccttttgttg----aaaaaatctagcattc 237  Q
    |||| ||||| ||  |||| |||||| |  |||||||    ||||||||||||||||    
T  13334628 tatcgataagttgattgatagaattctcactttgttgagaaaaaaaatctagcattc 13334572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 32475579 - 32475644
Alignment:
Q  85 actccgaaacataaaaggggattaagtcaccacatatgataattaaaagcaaaattatgatgattt 150  Q
    ||||| ||||| || |||||||| || ||||||||||||||||| ||||| |||||| ||||||||    
T  32475579 actcccaaacaaaagaggggattgagccaccacatatgataattgaaagcgaaattaggatgattt 32475644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 12955108 - 12955164
Alignment:
Q  100 aggggattaagtcaccacatatgataattaaaagcaaaattatgatgattttccttt 156  Q
    ||||||||||| ||||| ||||| ||||| |||||||||||||||| |||| |||||    
T  12955108 aggggattaagccaccatatatgttaattgaaagcaaaattatgataatttaccttt 12955164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 27626137 - 27626202
Alignment:
Q  85 actccgaaacataaaaggggattaagtcaccacatatgataattaaaagcaaaattatgatgattt 150  Q
    ||||| |||||||||||| |||||||  |||||||||| ||||||||||||||||||  |||||||    
T  27626137 actcccaaacataaaaggagattaagctaccacatatgctaattaaaagcaaaattagaatgattt 27626202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 35562608 - 35562669
Alignment:
Q  91 aaacataaaaggggattaagtcaccacatatgataattaaaagcaaaattatgatgattttc 152  Q
    ||||||||||||||||||| |||| |||  || |||||||||||||||||| ||||||||||    
T  35562608 aaacataaaaggggattaaatcactacacgtggtaattaaaagcaaaattaggatgattttc 35562669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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