View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_low_47 (Length: 250)
Name: NF21562_low_47
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 6e-86; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 71 - 231
Target Start/End: Original strand, 13442780 - 13442940
Alignment:
| Q |
71 |
gcttacattggaaatcctaagtaagatgatttatggctaaaacagaaattacacttagcaacaacatctcattgtttcgagtatggattggtttgggatc |
170 |
Q |
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| T |
13442780 |
gcttacattggaaatcctaagtaagatgatttatggctaaaacagaaattacacttagcaacaacatctcattgtttcgagtatggattggtttgggatc |
13442879 |
T |
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| Q |
171 |
aaattctggcttttcattttgaatagctttgtcacatttatcagctcctataccagcagat |
231 |
Q |
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| T |
13442880 |
aaattctggcttttcattttgaatagctttgtcacatttatcagctcctataccagcagat |
13442940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 87 - 219
Target Start/End: Original strand, 13446730 - 13446862
Alignment:
| Q |
87 |
ctaagtaagatgatttatggctaaaacagaaattacacttagcaacaacatctcattgtttcgagtatggattggtttgggatcaaattctggcttttca |
186 |
Q |
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| T |
13446730 |
ctaagtaagatgatgtatggctaaaacagaaattacactgagtacaaacatctcattgtttcgaatatggattagttggggatcaaattctggcatttca |
13446829 |
T |
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| Q |
187 |
ttttgaatagctttgtcacatttatcagctcct |
219 |
Q |
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| T |
13446830 |
gcttgaattgctttgtcacaactattagctcct |
13446862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 13437595 - 13437736
Alignment:
| Q |
88 |
taagtaagatgatttatggctaaaacagaaattacacttagcaacaacatctcattgtttcgagtatggattggtttgggatcaaattctggcttttcat |
187 |
Q |
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| T |
13437595 |
taagtaagatgatttatagataaagaagaagctacactaagtaaaaacatctcattgttatgaacatggattggttggggatcaaaacttggcttttcat |
13437694 |
T |
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| Q |
188 |
tttgaatagctttgtcacatttatcagctcctataccagcag |
229 |
Q |
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| T |
13437695 |
tttgaatagctctgtcacaattatcagctcctatactagcag |
13437736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 13439121 - 13439191
Alignment:
| Q |
151 |
gtatggattggtttgggatcaaattctggctttt---cattttgaatagctttgtcacatttatcagctcc |
218 |
Q |
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| T |
13439121 |
gtatggattggaaggggatgaaattctggcttttgatcattttgaatagctttgtcataattatcagctcc |
13439191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 7665832 - 7665791
Alignment:
| Q |
137 |
tctcattgtttcgagtatggattggtttgggatcaaattctg |
178 |
Q |
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| T |
7665832 |
tctcattgtttcgaatatggattagttggggatcaaattctg |
7665791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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