View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21562_low_50 (Length: 246)
Name: NF21562_low_50
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_low_50 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 20817258 - 20817491
Alignment:
| Q |
1 |
catcttaattttgaacaagactccaattgacataggtccaatctacaaggctatcaaagaattaattataagtggatgaaatgaaatgaaacattgcctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20817258 |
catcttaattttgaacaagactccaattgacataggtccaatccacaaggctatcaaagaattaattataagtggatgaaatgaaatgaaacattgcctt |
20817357 |
T |
|
| Q |
101 |
tactcttaagacaccaataagatgccaacattcacttaactgaatgcaatg--tatgaacattatgcaatggataaattaaatcaccccaggtgaggcta |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20817358 |
tactcttaagacaccaataagatgccaacattcacttaactgaatgcaatgtatatgaacattatgcaatggataaattaaatcaccccaggtgaggcta |
20817457 |
T |
|
| Q |
199 |
tagcctaaagctattgcctaggtggacacatgtg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
20817458 |
tagcctaaagctattgcctaggtggacacatgtg |
20817491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University