View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_low_52 (Length: 239)
Name: NF21562_low_52
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 33 - 237
Target Start/End: Original strand, 30287487 - 30287692
Alignment:
| Q |
33 |
attatgtttagagtcgaatttgatgtcgtgacaatattctatctaagtgtcacaaaggactcagtttgcaatttgatggactgattgtactaataa-ttg |
131 |
Q |
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| T |
30287487 |
attatgtttagagttgaatttgatgttctgacaatattttatccaagtgtcacaaaggactcagtttgcaatttgatggactgattgtcctactaaattg |
30287586 |
T |
|
| Q |
132 |
atacagattaaggctgccattgcagttattcgcaatattcgtggtttacccccagcccaagatttcaagaaacatggagcctttgttgatctgtttgata |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30287587 |
atacagattaaggctgccattgcagttattcgcaatattcgaggtttacccccagcccaagatttcaagaaacatggagcctttgttgatctgtttgatt |
30287686 |
T |
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| Q |
232 |
ttcttc |
237 |
Q |
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|||||| |
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| T |
30287687 |
ttcttc |
30287692 |
T |
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