View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21562_low_6 (Length: 563)
Name: NF21562_low_6
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 10 - 549
Target Start/End: Complemental strand, 8636435 - 8635913
Alignment:
| Q |
10 |
catcatcactaacaataaaaatgtcaactttatacatactcagaaagcaaaatttaaaaattgaatcatttaatcaactgggtcgtttaaattagcaaaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8636435 |
catcatcactaacaataaaaatgtcaactttatacatactcagaaagcaaaatttaaaaattgaatcatttaatcaactgggtcgtttaaattagcaaaa |
8636336 |
T |
|
| Q |
110 |
ttttaaatttttcaatcacattagtactctgcagcagcacgacacttctaatcaaatatcaaattaatatgtgtttgtctgatgtatgacacatgccggt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8636335 |
ttttaaatttttcaatcacattagtactctgcagcagcacgacacttctaatcaaatatcaaattaatatgtgtttgtctgatgt--------------- |
8636251 |
T |
|
| Q |
210 |
gtccgacaagtctgccaccaatgtaattacattcaatcatgtgattctctcaagtaatgatcagtgttaatgtgtcggtgtcatagttgtgtcaggtgtc |
309 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8636250 |
--ccgacaagtctgccaccgatgtaattacattcaattatgtgattctctcaagtaatgatcagtgttaatgtgtcggtgtcatagttgtgtcaggtgtc |
8636153 |
T |
|
| Q |
310 |
tgtgtcagtgggacaaatgcaattaatatgatgaaagattggatttgtatgtacccagtgactagattggatttgaccaatgagccagaagatgatattg |
409 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8636152 |
tctgtcagtgggacgaatgcaattaatatgatgaaagattggatttgtatgtacccagtgactagattggatttgaccaatgagccagaagatgatattg |
8636053 |
T |
|
| Q |
410 |
acattgaagaagaagagagcattggcaaagagaagagggtggtgacagcaccatgtccatagagttgagaaaaaagaagggttgtttgggatggaaattg |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8636052 |
acattgaagaagaagagagcattggcaaagagaagagggtggtgatagcaccatgtccatagagttgagaaaaaagaagggttgtttgggatggaaattg |
8635953 |
T |
|
| Q |
510 |
atgagtgatagttgttgaggaatgtgagatagaagatgat |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8635952 |
atgagtgatagttgttgaggaatgtgagatagaagatgat |
8635913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 423
Target Start/End: Original strand, 48617796 - 48617857
Alignment:
| Q |
362 |
acccagtgactagattggatttgaccaatgagccagaagatgatattgacattgaagaagaa |
423 |
Q |
| |
|
|||||||| || ||||||||| || | |||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
48617796 |
acccagtggctggattggattagagcgatgagccaaaagaggatattgacgttgaagaagaa |
48617857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University