View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_low_61 (Length: 206)
Name: NF21562_low_61
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_low_61 |
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| [»] chr5 (3 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 2e-69; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 53 - 206
Target Start/End: Complemental strand, 41808675 - 41808522
Alignment:
| Q |
53 |
atcatcatttgtaagccatctggatatccttaattccatgccttgaattgnnnnnnnggaatagtaactgcatctatttctttaagctataaagcagaac |
152 |
Q |
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| T |
41808675 |
atcatcatttgtaagccatctggatatccttaattccatgccttgaattgaaaaaaaggaatagtaactgcatctatttctttaagctataaagcagaac |
41808576 |
T |
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| Q |
153 |
agtgattttgtaagtacaataactaataagcattaaaagtagcataaccattga |
206 |
Q |
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| T |
41808575 |
agtgattttgtaagtacaataactaataagcattaaaagtagcataaccattga |
41808522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 41807798 - 41807855
Alignment:
| Q |
1 |
atcctacaacacgaatcacattcactgttagttcaattcatgtccttttttcatcatc |
58 |
Q |
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| T |
41807798 |
atcctacaacacgaatcacattcactgttagttcaattcatgtccttttttcatcatc |
41807855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 41362925 - 41362983
Alignment:
| Q |
148 |
agaacagtgattttgtaagtacaataactaataagcattaaaagtagcataaccattga |
206 |
Q |
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| T |
41362925 |
agaacaatgactttgtatgtacaataactgataagcattagaagtagcataaccattga |
41362983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 55 - 206
Target Start/End: Complemental strand, 745565 - 745414
Alignment:
| Q |
55 |
catcatttgtaagccatctggatatccttaattccatgccttgaattgnnnnnnnggaatagtaactgcatctatttctttaagctataaagcagaacag |
154 |
Q |
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| T |
745565 |
catcatatgtaagccacgtggatcttcttaatttcatatcttgaattgaaaaaaaggaatagtaactgcatctatttctttcagctataaagcagaacag |
745466 |
T |
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| Q |
155 |
tgattttgtaagtacaataactaataagcattaaaagtagcataaccattga |
206 |
Q |
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| T |
745465 |
tgactttgtaagtacaataagcaataagcattaaaagtagcataaccattga |
745414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 128 - 206
Target Start/End: Original strand, 38572123 - 38572201
Alignment:
| Q |
128 |
atttctttaagctataaagcagaacagtgattttgtaagtacaataactaataagcattaaaagtagcataaccattga |
206 |
Q |
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| T |
38572123 |
atttcgttaagttataaagcaaaacagtgactttgtaagtacaataactaataagcattaaaagtaggataaccattga |
38572201 |
T |
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