View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_low_7 (Length: 557)
Name: NF21562_low_7
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 197 - 541
Target Start/End: Original strand, 32913920 - 32914264
Alignment:
| Q |
197 |
tcctaatattgtgctcttactttggatcccataatgttgtccataggttttataatttggagaagaaataaacgaaattcatttgttgatattggatggc |
296 |
Q |
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| T |
32913920 |
tcctaatattgtgctcttactttggatcccataatgttgtccataggttttataatttggagaagaaataaacgaaattcatttgttgatattggatgga |
32914019 |
T |
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| Q |
297 |
aacattttatatcctgaaaaatccttgttcaacttatgccaattttttgttgaagtttatagtataataagctagctagtctggtttagtaggnnnnnnn |
396 |
Q |
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| T |
32914020 |
aacattttatatcctgaaaaatccttgttcaacttatgccaattttttgttgaagtttatagtataataagctagctagtctggtttagtaggaaaaaaa |
32914119 |
T |
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| Q |
397 |
ttggttcaaaaacagaataggaaacaaatcatgaatgattgaactacnnnnnnnntcttccaaagaatttctgagtaatttacttaagaatgaggtttct |
496 |
Q |
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| T |
32914120 |
ttggttcaaaaacagaataggaaacaaatcatgaatgattgaactacaaaaaaaatcttccaaagaatttctgagtaatttacttaagaatgaggtttct |
32914219 |
T |
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| Q |
497 |
acatttattgattatgttatcatttgtgtactgcaacaatgttgt |
541 |
Q |
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| T |
32914220 |
acatttattgattatgttatcatttgtgtactgcaacaatgttgt |
32914264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 32913762 - 32913874
Alignment:
| Q |
39 |
cctccttctgtactatctataacaatgttatcggtaggtatcagtgaaatgtcgagagtttctgtaatgtttcggccgttataattaggttgacattgtt |
138 |
Q |
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| T |
32913762 |
cctccttctgtactatctataacaatgttatcggtaggtatcagtgaaatgtggagagtttctgtaatgtttcggccgttataattaggttgacattgtt |
32913861 |
T |
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| Q |
139 |
gctatgagtctta |
151 |
Q |
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| T |
32913862 |
gctatgagtctta |
32913874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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