View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_low_8 (Length: 556)
Name: NF21562_low_8
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_low_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Original strand, 43393872 - 43394429
Alignment:
| Q |
1 |
tacataagcacttataagatataagataagttgtttatccaaccagtgccaatcaacaagtgagttagttgacttctgttcaaatatcaaactcaaaaat |
100 |
Q |
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| T |
43393872 |
tacataagcacttataagatataagataagttgtttatccaaccagtgccaatcaacaagtgagttagttgacttctgttcaaatatcaaactcaaaaat |
43393971 |
T |
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| Q |
101 |
taatgtcgaaaatattttagagagggagnnnnnnnnnn--cctcttcctctgaattatccgcatactcaattactcaacaccaaaagaaacatcaaattc |
198 |
Q |
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| T |
43393972 |
taatgtagaaaatattttagagagggagaaaaaaaaaaaacctcttcctctgaattatccgcatactcaattactcaacgccaaaagaaacatcaaattc |
43394071 |
T |
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| Q |
199 |
aacataatttgttcttgttttcaacattttgtaaactcacagaagaaactataaatactaaaagaaactagcatcacacaaacataaataaataagaaga |
298 |
Q |
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| T |
43394072 |
aacataatttgttcttgttttcaacattttgtaaactcacagaagaaactataaacactaaaagaaactagcatcacacaaacataaataaataagaaga |
43394171 |
T |
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| Q |
299 |
agaaatcttactttgaagaaggaggagaaacctgtggtttgttatcatgcaaaggctttggagagtgtgtaacagtttctttaacaacaactgaagcaga |
398 |
Q |
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| T |
43394172 |
agaaatcttactttgaagaaggaggagaaacctgtggtttgttatcatgcaaaggctttggagagtgtgtaacagtttctttaacaacaactgaagcaga |
43394271 |
T |
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| Q |
399 |
gaaagggttttgttggttattacattcaccaacacctttagctttaggagagaacaagtttccatctttacacaaccccacttcagatccaccatttcca |
498 |
Q |
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| T |
43394272 |
gaaagggttttgttggttattacattcaccaacacctttagctttaggagagaacaagtttccatctttacacaaccccacttcagatccaccatttcca |
43394371 |
T |
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| Q |
499 |
gacaaaacccacttcccagaacttccatcagtaatagcatcagagaaaccccttttag |
556 |
Q |
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| T |
43394372 |
gacaaaacccacttcccagaaccaccatcagtaatagcatcagagaaaccccttttag |
43394429 |
T |
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