View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21563_high_3 (Length: 394)
Name: NF21563_high_3
Description: NF21563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21563_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 12 - 382
Target Start/End: Original strand, 45128870 - 45129240
Alignment:
| Q |
12 |
agcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttactcaccaatcccataacctttgaacaaagaggtg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45128870 |
agcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttactcaccaatcccataacctttgaacaaagaggtg |
45128969 |
T |
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| Q |
112 |
aaactgagtctctattgtactcacttacataacgagagtaattacacactctagtgaacatgttgtaagttgcatctgatattagtccatgtgaccaaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45128970 |
aaactgagtctctattgtactcacttacataacgagagtaattacacactctagtgaacatgttgtaagttgcatctgatattagtccatgtgaccaaaa |
45129069 |
T |
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| Q |
212 |
gaattcagcccttgaattgaaatcagttgcatattctagaactggatttcccaactgcaattcaactttggtatcaacagctagcaaattgtatggaatn |
311 |
Q |
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| T |
45129070 |
gaattcagcccttgaattgaaatcagttgcatattctagaactggatttcccaactgcaattcaactttggtatcaacagctagcaaattgtatggaata |
45129169 |
T |
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| Q |
312 |
nnnnnnntcatcaatgtagcattacttaccgctatgcctttaaggttgaatatcttgtttcttttgttcat |
382 |
Q |
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| T |
45129170 |
aaaaaaatcatcaatgtagccttacttacggctatgcctttaaggttgaatatcttgtttcttttgttcat |
45129240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 272
Target Start/End: Original strand, 40280725 - 40280985
Alignment:
| Q |
12 |
agcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttactcaccaatcccataacctttgaacaaagaggtg |
111 |
Q |
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| T |
40280725 |
agcactgaggaaatgcatacatcaagggtaacatcatatttgtccacaaacttgctggtttctctgcttacttggctcatgacctttgaacaaagcaggg |
40280824 |
T |
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| Q |
112 |
aaactgagtctctattgtactcacttacataacgagagtaattacacactctagtgaacatgttgtaagttgcatctgatattagtccatgtgaccaaaa |
211 |
Q |
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||| |||| ||||| ||||||||||||||| | || ||||| || || |||||||| |||||||||| ||||||||| | |||||| ||||| || |
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| T |
40280825 |
aaatggagtttctatagtactcacttacatactgcgaataattgcagcctgcggtgaacattttgtaagttgaatctgatatcaatccatgagaccagaa |
40280924 |
T |
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| Q |
212 |
gaattcagcccttgaattgaaatcagttgcatattctagaactggatttcccaactgcaat |
272 |
Q |
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| T |
40280925 |
gaactcagcccttgaattgaagtcagtggcatattctagaagtggatttcccaactgcaat |
40280985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 6632284 - 6632346
Alignment:
| Q |
197 |
tccatgtgaccaaaagaattcagcccttgaattgaaatcagttgcatattctagaactggatt |
259 |
Q |
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| T |
6632284 |
tccatgagaccaaaagaactcagctcttgaattaaaatctgttgcaaattctaaaactggatt |
6632346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 6632101 - 6632166
Alignment:
| Q |
14 |
cacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttact |
79 |
Q |
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|||||| || || ||||||||||||||||||||||| ||||| |||||||| || |||||| |||| |
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| T |
6632101 |
cacagaagatatacaaacatcaagagtgacatcatacttgtcaacaaatctgcttgtttctgtact |
6632166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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