View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21563_high_5 (Length: 341)
Name: NF21563_high_5
Description: NF21563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21563_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 46628487 - 46628205
Alignment:
| Q |
19 |
cctgtaggagagtccaaaattttgatttaatttctcttctaccccatgtggatgtagtcaacaatcaacatatcccttcaaagacattctgttattcatt |
118 |
Q |
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| T |
46628487 |
cctgtaggagagtccaaaattttgatttaatttctcttctaccccatgtggatgtagtcaacaatcaacatatcccttcaaagacattctgttattcatt |
46628388 |
T |
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| Q |
119 |
acatgataataatacttgacttaaaacaaaataatggagtttaaattgtttattaccttgtttagaatactaaaacaagggataatacaaggcacaggct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46628387 |
acatgataataatacttgacttaaaacaaaataatggagtttaaattgtttattaccttgtttagaatactaaaacaagggacaatacaaggcacaggct |
46628288 |
T |
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| Q |
219 |
ttgaatcaacaactttggagaatcttgtgtatggctaataatgttgttcacatgggtttacaatatgagatactgtttgattg |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46628287 |
ttgaatcaacaactttggagaatcttgtgtatggctaataatgttgttcacatgggtttacaatatgagatactgtttgattg |
46628205 |
T |
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