View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21563_low_15 (Length: 238)
Name: NF21563_low_15
Description: NF21563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21563_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 38580185 - 38580404
Alignment:
| Q |
1 |
taagcgtgagaaataaggaagccagagtataccgcgcttgctttcctggggcgcttgtcctgggatgacctactgcagataattgtatcagctgcgtcgc |
100 |
Q |
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| T |
38580185 |
taagcgtgagaaataaggaagccagagtataccgcgcttgctttcctggggcgtttgtcctgggatgacctactgcagataattgtatcagctgcgtcgc |
38580284 |
T |
|
| Q |
101 |
cttcatttgcaattccatttccatttgctgtgctgttctctttcccgtgtgcaaaactctctcttgaagcaactggctgtaattgaaaaataaattacat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38580285 |
cttcatttgcaattccatttccatttgctgtgctgttctctttcccgtgcgcaaaactctctcttgaagcaactggctgtaattgaaaaataaattacat |
38580384 |
T |
|
| Q |
201 |
tatcagttacatgctagtaa |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
38580385 |
tatcagttacatgctagtaa |
38580404 |
T |
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