View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21563_low_17 (Length: 218)
Name: NF21563_low_17
Description: NF21563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21563_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 1948225 - 1948037
Alignment:
| Q |
13 |
aagaatatctgttgcatgcnnnnnnncaacaggtcttaggccatcgtcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaa |
112 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1948225 |
aagaatatctgttgcatgctttttttcaacaggtcttaggccatcgtcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaa |
1948126 |
T |
|
| Q |
113 |
tatagagaaaccacagttgctgattatgcagcctactttaaagcaaaaggactagatggtacttctgctcttacacattacaagatttg |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1948125 |
tatagagaaaccacagttgctgattatgcagcctactttaaagcaaaaggactagatggtacttctgctcttacacattacaagatttg |
1948037 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 2029808 - 2029996
Alignment:
| Q |
13 |
aagaatatctgttgcatgcnnnnnnncaacaggtcttaggccatcgtcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaa |
112 |
Q |
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||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
2029808 |
aagaatatctgttgcatgctttttctccacaggccttaggccatcgtcaaagctctatggacctatgaaggaactattatcagaaaacaatcctcccaaa |
2029907 |
T |
|
| Q |
113 |
tatagagaaaccacagttgctgattatgcagcctactttaaagcaaaaggactagatggtacttctgctcttacacattacaagatttg |
201 |
Q |
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|| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2029908 |
tacagagaaaccacagttgctgattttgcagcctactttaatgcaaaaggactagatggtacttctgctcttacacattacaagatttg |
2029996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 44 - 201
Target Start/End: Original strand, 10769486 - 10769643
Alignment:
| Q |
44 |
ggtcttaggccatcgtcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatgcag |
143 |
Q |
| |
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|||| |||| |||| |||||||||||||||||||| |||||||||||||||||| | |||||| ||| ||| ||||||||| |||||||||| |||| || |
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| T |
10769486 |
ggtcataggtcatcctcaaagctctatggacctataaaggaactattatcagaagacaatcctcccatatacagagaaacctcagttgctgactatgtag |
10769585 |
T |
|
| Q |
144 |
cctactttaaagcaaaaggactagatggtacttctgctcttacacattacaagatttg |
201 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10769586 |
cctattttgaagcaaaaggactagatggtacttctgctcttacacattacaagatttg |
10769643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 54 - 201
Target Start/End: Original strand, 2051982 - 2052129
Alignment:
| Q |
54 |
catcgtcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatgcagcctactttaa |
153 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |||||||| | |||||| ||||||| |||||||| | ||||||||||||| |||||||||| |
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| T |
2051982 |
catcttcaaagctctatggacctatgaaggaactgctatcagaagacaatcctcccaaatacagagaaacttctgttgctgattatgtagcctactttcg |
2052081 |
T |
|
| Q |
154 |
agcaaaaggactagatggtacttctgctcttacacattacaagatttg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2052082 |
agcaaaaggactagatggtacttctgctcttacacattacaagatttg |
2052129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 41 - 201
Target Start/End: Original strand, 2034754 - 2034914
Alignment:
| Q |
41 |
acaggtcttaggccatcgtcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatg |
140 |
Q |
| |
|
|||||| ||||| |||| |||||||||||||||||||| |||||||||||||||||| | |||||| | ||||| |||||||| || ||| ||||||||| |
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| T |
2034754 |
acaggtattaggtcatcctcaaagctctatggacctataaaggaactattatcagaagacaatcctcctaaatacagagaaacaacggtttctgattatg |
2034853 |
T |
|
| Q |
141 |
cagcctactttaaagcaaaaggactagatggtacttctgctcttacacattacaagatttg |
201 |
Q |
| |
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||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2034854 |
tagcttactttgaaaaaaaaggactagatggtacttctgctcttacacattacaagatttg |
2034914 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 41 - 201
Target Start/End: Original strand, 2038832 - 2038992
Alignment:
| Q |
41 |
acaggtcttaggccatcgtcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatg |
140 |
Q |
| |
|
||||||| | || |||| ||||||||||||||||| || ||||| |||||||||||| | |||||| | ||||| |||||||||||||||||||| ||| |
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| T |
2038832 |
acaggtcattggtcatcctcaaagctctatggaccaataaaggatctattatcagaagacaatcctcctaaatacagagaaaccacagttgctgactatc |
2038931 |
T |
|
| Q |
141 |
cagcctactttaaagcaaaaggactagatggtacttctgctcttacacattacaagatttg |
201 |
Q |
| |
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||| |||||| || ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2038932 |
tagcgtactttgtagaaaaaggattagatggtacttctgctcttacacattacaagatttg |
2038992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 54 - 201
Target Start/End: Original strand, 2059043 - 2059190
Alignment:
| Q |
54 |
catcgtcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatgcagcctactttaa |
153 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||||||||||||| | |||||| ||||||| |||||||| | ||||||||||||| ||||| |||| |
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| T |
2059043 |
catcttcaaaactctatggaccaatgaaggaactattatcagaagacaatcctcccaaatacagagaaacttctgttgctgattatgtagcctgctttcg |
2059142 |
T |
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| Q |
154 |
agcaaaaggactagatggtacttctgctcttacacattacaagatttg |
201 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| ||| |||||| |
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| T |
2059143 |
agcaaaaagactagatggtacttctgctcttacacatcacatgatttg |
2059190 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 49 - 201
Target Start/End: Original strand, 2048083 - 2048235
Alignment:
| Q |
49 |
taggccatcgtcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatgcagcctac |
148 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||| ||||||||||||||| | |||||| | ||||| ||||||||||||||||| || |||| | ||||| |
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| T |
2048083 |
taggtcatcttcaaagctctatggacctatgaaagaactattatcagaagacaatcctcctaaatacagagaaaccacagttgcagactatgtaacctac |
2048182 |
T |
|
| Q |
149 |
tttaaagcaaaaggactagatggtacttctgctcttacacattacaagatttg |
201 |
Q |
| |
|
||| | ||||||| | |||||||||||||||||||||||||||| |||||| |
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|
| T |
2048183 |
tttgtaaaaaaaggattggatggtacttctgctcttacacattacaggatttg |
2048235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 54 - 201
Target Start/End: Original strand, 2055839 - 2055989
Alignment:
| Q |
54 |
catcgtcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatgcagc---ctactt |
150 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| ||||||||| | |||||| | ||||| | |||||| || ||||||||||||| ||| |||||| |
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| T |
2055839 |
catcctcaaagctctatggaccaatgaaggaactgttatcagaagacaatcctcctaaatacaaagaaactactgttgctgattatgtagcctactactt |
2055938 |
T |
|
| Q |
151 |
taaagcaaaaggactagatggtacttctgctcttacacattacaagatttg |
201 |
Q |
| |
|
| |||||||||| |||||||||||||||| ||| ||||||||| ||||| |
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|
| T |
2055939 |
tcgagcaaaaggagtagatggtacttctgcacttgaacattacaaaatttg |
2055989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 2030932 - 2030984
Alignment:
| Q |
42 |
caggtcttaggccatcgtcaaagctctatggacctatgaaggaactattatca |
94 |
Q |
| |
|
||||||||||||||| |||| ||||||||| ||| || || |||||||||||| |
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|
| T |
2030932 |
caggtcttaggccattgtcagagctctatgtaccaataaaagaactattatca |
2030984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 201
Target Start/End: Complemental strand, 48904959 - 48904814
Alignment:
| Q |
59 |
tcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatgcagcctacttt---aaag |
155 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||| ||| | |||||| ||||||| |||||||||||| ||| || ||||||| ||||| | || |
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| T |
48904959 |
tcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaaccacaattggagactatgcagtctactctccagcag |
48904860 |
T |
|
| Q |
156 |
caaaaggactagatggtacttctgctcttacacattacaagatttg |
201 |
Q |
| |
|
||||| |||||| | ||||||||| |||| |||||||||| ||||| |
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|
| T |
48904859 |
caaaaagactaggttgtacttctgttctttcacattacaaaatttg |
48904814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 201
Target Start/End: Complemental strand, 28734983 - 28734843
Alignment:
| Q |
61 |
aaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatgcagcctactttaaagcaaaa |
160 |
Q |
| |
|
|||||| ||||||||||| | ||| ||||||||||| | || ||| ||| ||||||||||||||| |||||||||||| ||||||||| |||||| |
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|
| T |
28734983 |
aaagctttatggacctataacagaattattatcagaagacaaccctcccagatatagagaaaccacgtttgctgattatgtagcctacttatgtgcaaaa |
28734884 |
T |
|
| Q |
161 |
ggactagatggtacttctgctcttacacattacaagatttg |
201 |
Q |
| |
|
|| || ||||| ||||||| |||| ||||| |||| |||| |
|
|
| T |
28734883 |
gggcttgatggcacttctgttcttcaacatttcaagctttg |
28734843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 184
Target Start/End: Complemental strand, 28699483 - 28699360
Alignment:
| Q |
61 |
aaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatgcagcctactttaaagcaaaa |
160 |
Q |
| |
|
|||||| ||||||||||| | ||| ||||||||||||| || ||| ||| ||| | ||||||||| |||||||||| | ||||||| | | |||||| |
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|
| T |
28699483 |
aaagctttatggacctataacagaattattatcagaaaacaaccctcccagatacaaagaaaccactgttgctgattttatagcctacgtgtatgcaaaa |
28699384 |
T |
|
| Q |
161 |
ggactagatggtacttctgctctt |
184 |
Q |
| |
|
|| || ||||| ||||||| |||| |
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|
| T |
28699383 |
gggcttgatggcacttctgttctt |
28699360 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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