View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21563_low_2 (Length: 476)
Name: NF21563_low_2
Description: NF21563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21563_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 50222403 - 50221928
Alignment:
| Q |
1 |
cagaatcgctgcatggtttaaaaaccgtgataatgccctgtcaagaattaagtttattgatagactatttaactctaaatctctggtaatgactaggact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50222403 |
cagaatcgctgcatggtttaaaaaccgtgataatgccctgtcaagaattaagtttattgatagactatttaactctaaatctctggtaatgactaggact |
50222304 |
T |
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| Q |
101 |
aagatttttcttggctcccctccacatccagtcactgaactgtcctccatccgatccacctctcataactagtacttattcctgttttatttacacatac |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
50222303 |
aagatttttcttggctgccctccacatccagtcactgaactgtcctccatccgatccacctcttataactagtacttattcatgttttatttacacatac |
50222204 |
T |
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| Q |
201 |
ctaaattacatacgacgagattctatcatctttttataatacaagataccttcgacattctctcaaatggatttatttctagtcctattgtgtcttctat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50222203 |
ctaaattacatacgacgagattctatcatctttttataatacaatataccttcgactttctctcaaatggatttatttctagtcctattgtgtcttctat |
50222104 |
T |
|
| Q |
301 |
aaccaccacaaatcgtagtatcattttcatctctagaacatcgagtttacattttgttgaaactttaactttcagttgtattcaacaaatgaaagagttg |
400 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50222103 |
aaccaccacaaatcgtagtatcattttcatctccagaacatcgagtttacattttgttgaaactttaactttcagttgtattcagcaaatgaaagagttg |
50222004 |
T |
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| Q |
401 |
caaccatgcagttgagtttttcattaaaaagaccttaagcatttattcatttcaggttgttttagtaagaaaaaag |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50222003 |
caaccatgcagttgagtttttcattaaaaagaccttaagcatttattcatttcaggttgttttagtaagaaaaaag |
50221928 |
T |
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