View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21563_low_3 (Length: 423)
Name: NF21563_low_3
Description: NF21563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21563_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 187 - 345
Target Start/End: Complemental strand, 2203823 - 2203665
Alignment:
| Q |
187 |
agctatatggagtcagatcctttcaaaattgctgtggaaggtgtggagagattcaaggaacaaaactgtgatcttataattgttgataccagtggacgcc |
286 |
Q |
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| T |
2203823 |
agctatatggagtcagatcctgtgaaaattgctgtggaaggtgtggaaagattcaagaaagaaaactgtgatcttataattgttgatactagtgggcggc |
2203724 |
T |
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| Q |
287 |
acaaacaagaagctgccctatttgaagaaatgcgtcaactttcagaagcaacggtattt |
345 |
Q |
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| T |
2203723 |
acaaacaagaagctgctctttttgaagaaatgcgtcaagtttcagaagcaacggtattt |
2203665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 188
Target Start/End: Complemental strand, 2204930 - 2204794
Alignment:
| Q |
49 |
acttgtacaaaatacgcccattattatcagaagaaaggatggaagccagcttaattagtatgtgcagatacatttagagctgctgcatttgatcaattga |
148 |
Q |
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|||||||||||||| || |||| |||| |||||||| |||||||||||| ||||||||||||||||||| ||||||| ||| |||||||| |||| |
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| T |
2204930 |
acttgtacaaaatatgcattttatcatcaaaagaaaggctggaagccagctc---tagtatgtgcagatacattcagagctggtgcgtttgatcagttga |
2204834 |
T |
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| Q |
149 |
agctcaatgccactaaagctaaaattcctttttgtggaag |
188 |
Q |
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| T |
2204833 |
agcaaaatgcaaccaaagctaagatccctttctatggaag |
2204794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 187 - 343
Target Start/End: Original strand, 44826288 - 44826444
Alignment:
| Q |
187 |
agctatatggagtcagatcctttcaaaattgctgtggaaggtgtggagagattcaaggaacaaaactgtgatcttataattgttgataccagtggacgcc |
286 |
Q |
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| T |
44826288 |
agctatatggagtcagatcctgtcaaaattgctgtggaaggtgtggaaagattcaaggaagaagaccatgatcttataattgttgataccagtgggcggc |
44826387 |
T |
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| Q |
287 |
acaaacaagaagctgccctatttgaagaaatgcgtcaactttcagaagcaacggtat |
343 |
Q |
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| T |
44826388 |
acaaacaagaagcatccctttttgaagaaatgcgccaactttcggaagctacggtat |
44826444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 29 - 195
Target Start/End: Original strand, 44823924 - 44824087
Alignment:
| Q |
29 |
caggttctggaaagactacaacttgtacaaaatacgcccattattatcagaagaaaggatggaagccagcttaattagtatgtgcagatacatttagagc |
128 |
Q |
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| T |
44823924 |
caggttctggaaaaactacaacatgtacaaaatatgcgcattgttatcagaagaaaggatggaagccagctt---tagtgtgtgcagatacatttagagc |
44824020 |
T |
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| Q |
129 |
tgctgcatttgatcaattgaagctcaatgccactaaagctaaaattcctttttgtggaagctatatg |
195 |
Q |
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| T |
44824021 |
tggtgcatttgatcaattgaagcaaaatgctactaaagctaagatccctttttatggaaggtatatg |
44824087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 211 - 329
Target Start/End: Complemental strand, 33167778 - 33167657
Alignment:
| Q |
211 |
aaaattgctgtggaaggtgtggagagattcaaggaacaaaactgtgatcttataattgttgataccagtggacgccacaaacaa---gaagctgccctat |
307 |
Q |
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||||||| |||||||| |||||||| ||||||||| |||||| ||||||||||| ||||||||||||||| | ||||||||| |||| ||| || | |
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| T |
33167778 |
aaaattgtggtggaaggcgtggagaggttcaaggaagaaaactatgatcttataagtgttgataccagtgggggtcacaaacaagaggaagatgctcttt |
33167679 |
T |
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| Q |
308 |
ttgaagaaatgcgtcaactttc |
329 |
Q |
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||||||||||||| ||| |||| |
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| T |
33167678 |
ttgaagaaatgcgccaagtttc |
33167657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 349
Target Start/End: Complemental strand, 33116080 - 33115938
Alignment:
| Q |
209 |
tcaaaattgctgtggaaggtgtggagagattcaaggaacaaaactgtgatcttataattgttgataccagtggacgccacaaac---aagaagctgccct |
305 |
Q |
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|||||||||| ||| |||||||||| |||| |||||| ||| |||||||||||||||||||||| ||||| | ||||||| |||||| ||| || |
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| T |
33116080 |
tcaaaattgccgtgaaaggtgtggacagatgcaaggaggaaa-ctgtgatcttataattgttgatgtgagtggggggcacaaacaagaagaagatgctct |
33115982 |
T |
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| Q |
306 |
atttgaagaaatgcgtcaactttcagaagcaacggtatttatta |
349 |
Q |
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| T |
33115981 |
tattgaagaaattcaccaagtttcaaaagcaacggtatttatta |
33115938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 33168678 - 33168631
Alignment:
| Q |
104 |
tagtatgtgcagatacatttagagctgctgcatttgatcaattgaagc |
151 |
Q |
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| T |
33168678 |
tagtttgtgcagatacatttagagatggtgcatttgatcaattgaagc |
33168631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 33159341 - 33159294
Alignment:
| Q |
104 |
tagtatgtgcagatacatttagagctgctgcatttgatcaattgaagc |
151 |
Q |
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|||| ||||||||| ||||||||| || |||||||||||||||||||| |
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| T |
33159341 |
tagtttgtgcagatgcatttagagatggtgcatttgatcaattgaagc |
33159294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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