View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21563_low_6 (Length: 341)
Name: NF21563_low_6
Description: NF21563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21563_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 3096097 - 3095754
Alignment:
| Q |
1 |
gctagtgcaaggagcactataacactcatagcaacacgnnnnnnntataagtaggcgccgcatatagacggaacaccaaacaatttcataaaaaccccac |
100 |
Q |
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| T |
3096097 |
gctagtgcaaggagcactataacactcacaacaacacgaaaaaaatacaagtaggcgtcgtatatagacggaacaccatacaatctcataaaaatcccac |
3095998 |
T |
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| Q |
101 |
aaaacccaaactaaggtagcgaggccgacatatacatgctaagaaatgcacgaataccc-tgcctcataccttccggcgaaacaaaaaccgaccaccacc |
199 |
Q |
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| T |
3095997 |
aaaactcaaattaagatagtgaggccgacatatacatgctaagaaatgcacgcatacccctgcctcataccttccagcgaaacaaaaaccgaccaccacc |
3095898 |
T |
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| Q |
200 |
aaatcccagctgaaccgaacatcccacataccacaaatagcaggcaggctgcagacgcaatagaagcaggcagaactgaacagcaggagcag--acaggg |
297 |
Q |
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| T |
3095897 |
aaatcccagctgaaccgaacatcccacataccacaaatagcaggcaggctgcagacgcaacagaagcaggcagaaccgaacagcagcagcagacacaggg |
3095798 |
T |
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| Q |
298 |
accaaaacagcgcgcaaaggaaaccaatgggaaccagaatccac |
341 |
Q |
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| T |
3095797 |
accaaaacagcgcgcaaagtaaaccaatgggagcgagaatccac |
3095754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 43503669 - 43503944
Alignment:
| Q |
1 |
gctagtgcaaggagcactataacactcatagcaacacgnnnnnnntataagtaggcgccgcatatagacggaacaccaaacaatttcataaaaaccccac |
100 |
Q |
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| T |
43503669 |
gctagtgcaaggagcactataacactcgcggcaacatggaaaaaatacaaagaggcgccgcatatatacggaacaccaaccaaccccataaaaaccccac |
43503768 |
T |
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| Q |
101 |
aaaacccaaactaaggtagcgaggccgacatatacatgctaagaaatgcacgaata-ccctgcctcataccttccggcgaaacaaaaaccgaccaccacc |
199 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||||| |||| | ||||| |||||| | ||||||||| |
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| T |
43503769 |
aaaacccgggctaaggtagtgaggccgacatatacatgctaagaaaagcacgtatacccctgcctcacacctagcagcgaagcaaaaatccaccaccacc |
43503868 |
T |
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| Q |
200 |
aaatcccagctgaaccgaacatcccacataccacaaatagcaggcaggctgcagacgcaatagaagcaggcagaac |
275 |
Q |
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| T |
43503869 |
aatgcccagctgaaccgaacagctcacagaccacaaacagcaagtaggctgccaacgcagcaggagcaggcagaac |
43503944 |
T |
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