View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21563_low_8 (Length: 311)
Name: NF21563_low_8
Description: NF21563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21563_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 39487913 - 39487638
Alignment:
| Q |
20 |
tgtttcaaatcaacatcaattaaatctgctacaacagcatcctcatttaaattgaagactgggctccacaccttgaagctcgacagttcaggaagccaag |
119 |
Q |
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| T |
39487913 |
tgtttcaaatcaacatcaattaaatctgctacaacagcatcctcatttaaattgcagactgggctccacaccttgaagctcgacagttcaggaagccaag |
39487814 |
T |
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| Q |
120 |
ggtctttccagattttaacttgttgcccattaccaatcgaccatctccatccgagatcaatcacagatttagcattcatcaaactgcgccaagcatagct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39487813 |
ggtctttccagattttaacttgttgcccattaccaatcgaccatctccatccgagatcaatcacagatttagcattcatcaaactgcgccaagcatagct |
39487714 |
T |
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| Q |
220 |
gggctggtagccaatttgagcatccaaaaaacatgatctggaaaagtacctactcttgaacacccgagaaaggagg |
295 |
Q |
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| T |
39487713 |
gggctggtagtcaatttgagcatccaaaaaacatgatctggcaaagtacatactcttgaacacccgagaaaggagg |
39487638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 294
Target Start/End: Original strand, 5806906 - 5807124
Alignment:
| Q |
77 |
actgggctccacaccttgaagctcgacagttcaggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatct-ccatccgaga |
175 |
Q |
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| T |
5806906 |
actggactccaaaccttgaagcttggtaactcaggaagccaagggtccttccatattctaacttgttgcccgtttccaattgaccacctgcaaaccaaga |
5807005 |
T |
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| Q |
176 |
tcaatcacagatttagcattcatcaaactgcgccaagcatagctgggctggtagccaatttgagcatccaaaaaacatgatctggaaaagtacctactct |
275 |
Q |
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| T |
5807006 |
tcaattattgattttgcattacacaagcttctccaagcataactaggctgataaccactacgtgccttcaaaaaacttgttctcggaaagtacctactct |
5807105 |
T |
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| Q |
276 |
tgaacacccgagaaaggag |
294 |
Q |
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| T |
5807106 |
taaacacccatgaaaggag |
5807124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 46034035 - 46033761
Alignment:
| Q |
20 |
tgtttcaaatcaacatcaattaaatctgctacaacagcatcctcatttaaattgaagactgggctccacaccttgaagctcgacagttcaggaagccaag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
46034035 |
tgtttcaaatcaacatcaattaaatctgctacaacaacatcctcatttaaattgtagactgggctctacaccttgaagcttgacagttcaggaagccaaa |
46033936 |
T |
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| Q |
120 |
ggtctttccagattttaacttgttgcccattaccaatcgaccatctccatccgagatcaatcacagatttagcattcatcaaactgcgccaagcatagct |
219 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| |
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| T |
46033935 |
ggtctttccaaattttaactt-ttgcccattaccaatcgaccatctccatccgagatcaattacagatttagcattcatcaaactacaccaagcatagct |
46033837 |
T |
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| Q |
220 |
gggctggtagccaatttgagcatccaaaaaacatgatctggaaaagtacctactcttgaacacccgagaaaggagg |
295 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
46033836 |
gggctggcagccaatttgagcatccaaaaaacatgatctggcaaagtacctactcttgaacacccgagaaaggagg |
46033761 |
T |
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