View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21563_low_9 (Length: 304)

Name: NF21563_low_9
Description: NF21563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21563_low_9
NF21563_low_9
[»] chr2 (6 HSPs)
chr2 (18-304)||(35161774-35162055)
chr2 (41-304)||(44798059-44798314)
chr2 (83-304)||(44631079-44631292)
chr2 (18-96)||(39840071-39840149)
chr2 (18-66)||(39844978-39845026)
chr2 (131-169)||(39840189-39840227)


Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 35161774 - 35162055
Alignment:
Q  18 aatgtgttccactttagagaattggggcttagggattttgagtaattgaacaaaccctaagccgcaattcacacttatcactaatatcttctataaatat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  35161774 aatgtgttccactttagagaattggggcttagggattttgagtaattgaacaaaccctaagccccaattcacacttatcactaatttcttctataaatat 35161873  T
Q  118 cataattcataatttctttattattctctctcagacgtatgtcaaaaaatgcaacatcctccttcgtcttctgctgctctgaaatcccgcagaagaaccc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35161874 cataattcataatttctttattattctctctcagacgtatgtcaaaaaatgcaacatcctccttcgtcttctgctgctctgaaatcccgcagaagaaccc 35161973  T
Q  218 gcagaagaagcccagttcttcaaccaagtggtgagtctgttcgttagttatgttgattcactatttcatttcctgctgcaattcaat 304  Q
    |||||||||||| |||||||||||||||||||||||||||||    ||||||||||||||||| |||||| ||||||||||||||||    
T  35161974 gcagaagaagccgagttcttcaaccaagtggtgagtctgttc----gttatgttgattcacta-ttcattccctgctgcaattcaat 35162055  T

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Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 41 - 304
Target Start/End: Complemental strand, 44798314 - 44798059
Alignment:
Q  41 ggggcttagggattttgagtaattgaacaaaccctaagccgcaattcacacttatcactaatatcttctataaatatcataattcataat------ttct 134  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||      ||||    
T  44798314 ggggcttagggattttgagaaattgaacaaaccctaagccccaattcacacttatcactaatttcttctttaaatatcataattcataattgcttcttct 44798215  T
Q  135 ttattattctctctcagacgtatgtcaaaaaatgcaacatcctccttcgtcttctgctgctctgaaatcccgcagaagaacccgcagaagaagcccagtt 234  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||| ||||||||         ||||||||| |||||    
T  44798214 ttattattctctctcagacgtacatcaaaaaatgcaacatcctccttcgtcctctgctgctctgaaaccccgcaga---------agaagaagctcagtt 44798124  T
Q  235 cttcaaccaagtggtgagtctgttcgttagttatgttgattcactatttcatttcctgctgcaattcaat 304  Q
    |||||| ||||||||||||||    ||| ||||||||||||||||| |||||| ||||||||||||||||    
T  44798123 cttcaatcaagtggtgagtct----gttggttatgttgattcacta-ttcattccctgctgcaattcaat 44798059  T

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Target: chr2; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 83 - 304
Target Start/End: Complemental strand, 44631292 - 44631079
Alignment:
Q  83 aattcacacttatcactaatatcttctataaatatcataattcataatt------tctttattattctctctcagacgtatgtcaaaaaatgcaacatcc 176  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||      |||||||||||||||||||||||||  ||||||||||||||||||    
T  44631292 aattcacacttatcactaatttcttctttaaatatcataattcataattgcttcttctttattattctctctcagacgtacatcaaaaaatgcaacatcc 44631193  T
Q  177 tccttcgtcttctgctgctctgaaatcccgcagaagaacccgcagaagaagcccagttcttcaaccaagtggtgagtctgttcgttagttatgttgattc 276  Q
    ||||||||| ||||||||||||||| ||||||||         ||||||||| ||||||||||| ||||||||||||||    ||| |||||||||||||    
T  44631192 tccttcgtcctctgctgctctgaaaccccgcaga---------agaagaagctcagttcttcaatcaagtggtgagtct----gttggttatgttgattc 44631106  T
Q  277 actatttcatttcctgctgcaattcaat 304  Q
    |||| |||||| ||||||||||||||||    
T  44631105 acta-ttcattccctgctgcaattcaat 44631079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 39840071 - 39840149
Alignment:
Q  18 aatgtgttccactttagagaattggggcttagggattttgagtaattgaacaaaccctaagccgcaattcacacttatc 96  Q
    ||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  39840071 aatgtgttccactgtagagaattgtggcttagggattttgagaaattgaacaaaccctaagccccaattcacacttatc 39840149  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 39844978 - 39845026
Alignment:
Q  18 aatgtgttccactttagagaattggggcttagggattttgagtaattga 66  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  39844978 aatgtgttccactgtagagaattggggcttagggattttgagaaattga 39845026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 39840189 - 39840227
Alignment:
Q  131 ttctttattattctctctcagacgtatgtcaaaaaatgc 169  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  39840189 ttctttcttattctctctcagacgtacgtcaaaaaatgc 39840227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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