View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21564_high_2 (Length: 576)
Name: NF21564_high_2
Description: NF21564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21564_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 503; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 17 - 561
Target Start/End: Original strand, 5414343 - 5414891
Alignment:
| Q |
17 |
cacatgcgacttacaataatccacaaaataatcaaattacatcatatagtgaagcagttcggtttatataatggaaaccaaaaacaatcattaagtgcaa |
116 |
Q |
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| T |
5414343 |
cacatgcgacttacaataatccacaaaataatcaaattacatcatatagtgaagcagttcggtttatataatggaaaccaaaaacaatcattaagtgcaa |
5414442 |
T |
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| Q |
117 |
ctaagaatgttagttattcaataaaattgaggtgttacatgnnnnnnngagaaatgttaaacttaaaacttgtgagtgaaaatatatttgagaggccaat |
216 |
Q |
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| T |
5414443 |
ctaagaatgttagttattcaataaaattgaggtgttacatgtttttttgagaaatgttaaacttaaaacttgtgagtgaaaatatatttgagaggccaat |
5414542 |
T |
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| Q |
217 |
cacagaagcatcatatttgaattttagacattatggaaccatgacttcgagttgttgtcataatattatcaaattcatgatataaggggggttaa----c |
312 |
Q |
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| T |
5414543 |
cacagaagtatcatatttgaattttagacattatggaaccatgacttcgagttgttgtcataatattgtcaaattcatgatataaggggggttaattaac |
5414642 |
T |
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| Q |
313 |
tatatattttattccaacaaaggaattgtgttgaaatatcaaattaatgtttaagaaactatatatctactcaaactataactacttctcaaatagtttt |
412 |
Q |
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| T |
5414643 |
tatatattttattccaacaaaggaattgtgttgaaatatcaaattaatgtttaagaaactatatatctactcaaactataactacttctcaaatagtttt |
5414742 |
T |
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| Q |
413 |
tctcatcaattgtttgtcaatagcagagccacattcatttcttgcgccatttttcagcttcatataaaaaatatatgtagtatatatttatttttgtcaa |
512 |
Q |
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| T |
5414743 |
tctcatcaattgtttgtcaatagcagagccacattcatttcttgcgccatttttcagcttcatataaaaaatatatgtagtatatatttatttttgtcaa |
5414842 |
T |
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| Q |
513 |
ccatgactgataattcagaaagcaacgaaattcatcatgaggtagtttt |
561 |
Q |
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| T |
5414843 |
ccatgactgataattcagaaagcaacgaaattcatcatgaggtagtttt |
5414891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 5398437 - 5398483
Alignment:
| Q |
183 |
aacttgtgagtgaaaatatatttgagaggccaatcacagaagcatca |
229 |
Q |
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| T |
5398437 |
aacttgtgagtgaaaatatatttgacagacccatcacaggagcatca |
5398483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 5406687 - 5406641
Alignment:
| Q |
183 |
aacttgtgagtgaaaatatatttgagaggccaatcacagaagcatca |
229 |
Q |
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| T |
5406687 |
aacttgtgagtgaaaatatatttgacagacccatcacaggagcatca |
5406641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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