View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21564_high_5 (Length: 442)
Name: NF21564_high_5
Description: NF21564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21564_high_5 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 32059502 - 32059942
Alignment:
| Q |
1 |
tttgtgtgtaaaagaaattgtggataactctcacttaagaaggcatgggtattggg-gtgggatttggaggttgaaagttcccccaaaagttaagaatat |
99 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32059502 |
tttgtgagtaaaagaaattgtggataactctcacttaagaaggcatgggtatttggagtgtaatttggaggttgaaagttcccccaaaagttaagaatat |
32059601 |
T |
|
| Q |
100 |
ggtgtggcgagtgtgtaggaaatgtttgcctactcgtgtaagattgaactgtggaggggttaattgtccgtcgacgtgtattatgtgtaatgacccccat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32059602 |
ggtgtggcgagtgtgtaggaaatgtttgcctactcgtgtaagattgaactgtagaggggttaattgtccgtcgacgtgtat-atgtgtaatgacccccat |
32059700 |
T |
|
| Q |
200 |
gaggacagttatcannnnnnnnncccgctgctgtacagcagtaggtgtttggcgcacagcaggtctgtggtccttaattgagccgttgttaaataggttt |
299 |
Q |
| |
|
||||||||||||| || ||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32059701 |
gaggacagttatcgtatttttt--ccactgctgtacagaagtaggtgtatggcgcacagaaggtctgtggtccttaattgagccgttgttaaataggttt |
32059798 |
T |
|
| Q |
300 |
gatgatgcgccggagattaccttccatttgttggagcatgtaacagcgatgcaagcagaattaattgctacaatattgtggagtatttggaagagtagaa |
399 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32059799 |
gatgatgcaccggagattatcttccatttgttggagcatgtaacagcgatgcaagcagaattaattgctataatattgtggagtatttggaagagtagaa |
32059898 |
T |
|
| Q |
400 |
accttaatttgtggctgcgacagagaa-tgaataatagcaatat |
442 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
32059899 |
accttaatttgtggctgcgacagagaattgaataatagaaatat |
32059942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 74 - 313
Target Start/End: Original strand, 39532858 - 39533096
Alignment:
| Q |
74 |
aaagttcccccaaaagttaagaatatggtgtggcgagtgtgtaggaaatgtttgcctactcgtgtaagattgaactgtggaggggttaattgtccgtcga |
173 |
Q |
| |
|
|||||||| |||||||| |||| ||||||||||| || ||||| |||||||||||||||| || ||| |||| | ||||||||| ||||||||| | |
|
|
| T |
39532858 |
aaagttcctccaaaagtcaagagcatggtgtggcgtgtttgtagagaatgtttgcctactcgcgtcagactgaatcggagaggggttacttgtccgtcta |
39532957 |
T |
|
| Q |
174 |
cgtgtattatgtgtaatgacccccatgaggacagttatcannnnnnnnncccgctgctgtacagcagtaggtgtttggcgcacagcaggtctgtggtcct |
273 |
Q |
| |
|
|||| | |||| ||||| || ||||||||||||||||| || ||||||||||||||||||||| ||||| |||||||| ||||| || |
|
|
| T |
39532958 |
cgtgcgtgttgtgcaatgatccgcatgaggacagttatcacattttttt-ccactgctgtacagcagtaggtgtgtggcgtacagcaggattgtggcact |
39533056 |
T |
|
| Q |
274 |
taattgagccgttgttaaataggtttgatgatgcgccgga |
313 |
Q |
| |
|
||||||||||||| |||| ||||| |||| |||||||| |
|
|
| T |
39533057 |
taattgagccgttactaaacaggttcaatgacgcgccgga |
39533096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 41469685 - 41469768
Alignment:
| Q |
52 |
ttggggtgggatttggaggttgaaagttcccccaaaagttaagaatatggtgtggcgagtgtgtaggaaatgtttgcctactcg |
135 |
Q |
| |
|
||||||||| ||||||| || |||||||| || || |||||||||||| |||||||||||||||| ||||||| |||||||| |
|
|
| T |
41469685 |
ttggggtggaatttggaaattaaaagttccacctaaggttaagaatatgttgtggcgagtgtgtagagaatgtttacctactcg |
41469768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 171
Target Start/End: Original strand, 3237771 - 3237856
Alignment:
| Q |
86 |
aaagttaagaatatggtgtggcgagtgtgtaggaaatgtttgcctactcgtgtaagattgaactgtggaggggttaattgtccgtc |
171 |
Q |
| |
|
|||||||||| |||||| ||| ||||||||||| ||||||| ||||| ||||||||| | ||| || |||| |||| |||||||| |
|
|
| T |
3237771 |
aaagttaagagtatggtttggagagtgtgtagggaatgtttacctacgcgtgtaagactaaaccgtagaggtgttatgtgtccgtc |
3237856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 34072283 - 34072223
Alignment:
| Q |
46 |
tgggtattggggtgggatttggaggttgaaagttcccccaaaagttaagaatatggtgtgg |
106 |
Q |
| |
|
|||||||||| |||| || ||||| |||||||||||||| ||||| |||||| |||||||| |
|
|
| T |
34072283 |
tgggtattggagtggcatctggagattgaaagttccccccaaagtcaagaatttggtgtgg |
34072223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 33098307 - 33098398
Alignment:
| Q |
51 |
attggggtgggatttggaggttgaaagttcccccaaaagttaagaatatggtgtggcgagtgtgtaggaaatgtttgcctactcgtgtaaga |
142 |
Q |
| |
|
||||| |||| || ||||| |||||||| || || |||||||||| ||||| ||| ||||||||||| ||||||| ||||| |||| |||| |
|
|
| T |
33098307 |
attggagtggcatgtggagattgaaagtgcctccgaaagttaagagcatggtttggagagtgtgtagggaatgtttacctacacgtgcaaga |
33098398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 406
Target Start/End: Original strand, 33098619 - 33098661
Alignment:
| Q |
364 |
ttgctacaatattgtggagtatttggaagagtagaaaccttaa |
406 |
Q |
| |
|
|||||||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
33098619 |
ttgctacaattttatggagtatttggaagagcagaaaccttaa |
33098661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University