View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21564_low_1 (Length: 735)
Name: NF21564_low_1
Description: NF21564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21564_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 369 - 720
Target Start/End: Complemental strand, 34292923 - 34292572
Alignment:
| Q |
369 |
gtagagcaagatggattgtcttactgaattgggaaaggaagctgtcacaaaattgggagaattggttgtggagtcaaccatgaagcatttcaaatatttg |
468 |
Q |
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| T |
34292923 |
gtagagcaagatggattgtcttactgaattgggaaaggaagctgtcacaaaattgggagaattggttgtggagtcaatcatgaagcatttcaaatatttg |
34292824 |
T |
|
| Q |
469 |
acacaacacnnnnnnntcacaacaaatttggaggaagaacttgagaggttgaaaatgataaaacaagcattgcaaacaagggttgaaactgaaagaagga |
568 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34292823 |
acacaacacaaaaaaatcacaacaaatttggaggaagaacttgagaggttgaaaatgataaaacaagcattgcaaacaagggttgaaactgaaagaagga |
34292724 |
T |
|
| Q |
569 |
aaggatatgaaattgcacctaatgtgcaaaaatggctctatgaagtgacaacaattgaagatcagttgcaaaagtggctctctgatgaaaatagtattaa |
668 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34292723 |
aaggatatgaaattgcacctaatatgcaaaaatgggtctatgatgtgacaacaattgaagatcagttgcaaaagtggctctctgatgaaaatagagttaa |
34292624 |
T |
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| Q |
669 |
aaatagcaaaaaatgctttggtggacaatgctcaaatttagcatttaattat |
720 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34292623 |
aaatagcaaaaaatgctttggttgacaatgctcaaatttagcatttaattat |
34292572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 30 - 372
Target Start/End: Original strand, 34293005 - 34293359
Alignment:
| Q |
30 |
agaactataaattcaaattcctttttgtctatagaatgagacttcatttctttattttatctacagaatgagatcaatcctttgttagattatcgcatct |
129 |
Q |
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| T |
34293005 |
agaactataaattcaaattcctttttgtctatagaatgagacttcatttctttattttatctacagaatgagatcaatcctttgttagattatcgcatct |
34293104 |
T |
|
| Q |
130 |
cagtactcattagttctatttttctagtaatcattcatgccttaatatcaattttaaatattcatataggatttacagt--nnnnnnnnnnntcaatttt |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34293105 |
cagtactcattagttctatttttctagtaatcattcatgccttaatatcaattttaaatattcatataggatttacagtaaaaaaaataatatcaatttt |
34293204 |
T |
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| Q |
228 |
aagtgtgagagttacacttagagtttcactcattcaataacatcaattttatgtgtgagagtttcacttagtgttcctcttcgaaacggtgacaactttt |
327 |
Q |
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| T |
34293205 |
aagtgtgagagttacacttagagtttcactcattcaataacatcaattttatgtgtgagagtttcacttagtgttcctcttcgaaacggtgacaactttt |
34293304 |
T |
|
| Q |
328 |
tt----------cgtcgcgtgttctattttctattggtgtgttgtggtgtagtag |
372 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34293305 |
tttgtttcgacctgtcgcgtgttctattttctattggtgtgttgtggtggagtag |
34293359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 376 - 656
Target Start/End: Complemental strand, 34567427 - 34567147
Alignment:
| Q |
376 |
aagatggattgtcttactgaattgggaaaggaagctgtcacaaaattgggagaattggttgtggagtcaaccatgaagcatttcaaatatttgacacaac |
475 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34567427 |
aagatggattgtcttactgaattgggaaaggaaactgtcacaaaattgggagaattggttgtggagtcaaccatgaagcatttcaaatatttgacacaac |
34567328 |
T |
|
| Q |
476 |
acnnnnnnntcacaacaaatttggaggaagaacttgagaggttgaaaatgataaaacaagcattgcaaacaagggttgaaactgaaagaaggaaaggata |
575 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34567327 |
acaaaaaaatcacaacaaatttggaggaagaacttgagaggttgaaaatgataaaacaagcattgcaaacaagggttgaaactgaaagaaggaaaggata |
34567228 |
T |
|
| Q |
576 |
tgaaattgcacctaatgtgcaaaaatggctctatgaagtgacaacaattgaagatcagttgcaaaagtggctctctgatga |
656 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||||||||||||||||||| |
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| T |
34567227 |
tgaaattgcacctaatgtgcaaaaatggctctatgatgtcacaacaattgaaaatgagttgcaaaagtggctctctgatga |
34567147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 8e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 376 - 719
Target Start/End: Complemental strand, 15897140 - 15896797
Alignment:
| Q |
376 |
aagatggattgtcttactgaattgggaaaggaagctgtcacaaaattgggagaattggttgtggagtcaaccatgaagcatttcaaatatttgacacaac |
475 |
Q |
| |
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||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| | ||||||||||||| |||||||||||||||| |
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| T |
15897140 |
aagatggattgccttactgaattgggaaaagaagctgtcacaaaattgggacaattggttgtggagttatccatgaagcattttaaatatttgacacaac |
15897041 |
T |
|
| Q |
476 |
acnnnnnnntcacaacaaatttggaggaagaacttgagaggttgaaaatgataaaacaagcattgcaaacaagggttgaaactgaaagaaggaaaggata |
575 |
Q |
| |
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|| | |||| ||| ||||||| || || ||| || |||||||| ||||||||||||||||||| ||| || | |||||||||||| ||| | |
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| T |
15897040 |
acaaaaaaattacaatcaatctggaggaggagctcaagaacttaaaaatgatgaaacaagcattgcaaacaaaggtggacaatgaaagaaggaagggaca |
15896941 |
T |
|
| Q |
576 |
tgaaattgcacctaatgtgcaaaaatggctctatgaagtgacaacaattgaagatcagttgcaaaagtggctctctgatgaaaatagtattaaaaatagc |
675 |
Q |
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|||||||| ||| | |||||||||||||| | ||| ||||||| |||||| || ||| |||||| ||| ||||| ||||||||| | |||| || | |
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| T |
15896940 |
tgaaattgaacccatcgtgcaaaaatggctatctgatgtgacaattattgaaaatgagtggcaaaaatggatctctaatgaaaataatgttaacaagaag |
15896841 |
T |
|
| Q |
676 |
aaaaaatgctttggtggacaatgctcaaatttagcatttaatta |
719 |
Q |
| |
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|| ||||| |||||||||||||| ||| || ||||||||||||| |
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| T |
15896840 |
aagaaatgttttggtggacaatgttcagatatagcatttaatta |
15896797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 334 - 372
Target Start/End: Original strand, 46742669 - 46742707
Alignment:
| Q |
334 |
gcgtgttctattttctattggtgtgttgtggtgtagtag |
372 |
Q |
| |
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|||||||||||||||| |||||||||||||||| ||||| |
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| T |
46742669 |
gcgtgttctattttctgttggtgtgttgtggtggagtag |
46742707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 1533631 - 1533593
Alignment:
| Q |
334 |
gcgtgttctattttctattggtgtgttgtggtgtagtag |
372 |
Q |
| |
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|||||||||||||||| |||||||||||||||| ||||| |
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| T |
1533631 |
gcgtgttctattttctgttggtgtgttgtggtggagtag |
1533593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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