View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21564_low_10 (Length: 308)
Name: NF21564_low_10
Description: NF21564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21564_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 184 - 291
Target Start/End: Original strand, 4646762 - 4646869
Alignment:
| Q |
184 |
aggggatgcatttttactttaaaattgagacacttttctccaactccaagtaatcccaaaatctccaaaatattcttatgtattttgttgctctttctat |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4646762 |
aggggatgcatttttactttaaaattgagacacttttctccaactccaagtaatcccaaaatctccaaaatattcttatgtattttgttgctctttctat |
4646861 |
T |
|
| Q |
284 |
ttctcttt |
291 |
Q |
| |
|
|||||||| |
|
|
| T |
4646862 |
ttctcttt |
4646869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 4646637 - 4646694
Alignment:
| Q |
61 |
tagaaaactatgaagctaatttataatcgtgcatgacacggtcacacactaatagtat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4646637 |
tagaaaactatgaagctaatttataatcgtgcatgacacggtcacacactaatagtat |
4646694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 4655207 - 4655276
Alignment:
| Q |
186 |
gggatgcatttttactttaaaatt-gagacacttttctccaactccaagtaatcccaaaatctccaaaat |
254 |
Q |
| |
|
|||| ||||||||||||| ||||| |||||||||||||||||||||| ||||| ||| |||||||||| |
|
|
| T |
4655207 |
gggaagcatttttactttcaaatttgagacacttttctccaactccatgtaattttaaagtctccaaaat |
4655276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University