View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21564_low_11 (Length: 287)
Name: NF21564_low_11
Description: NF21564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21564_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 38607868 - 38608130
Alignment:
| Q |
19 |
acttcactctgcatttcatcctcattccattcattttccctctctcagaattgaaatcaaatcttcaatcactgcttcttctactttttctctaacaacc |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38607868 |
acttcactctgcatttcatcctcgttccattcattttccctctctcagaattgaaatcaaatcttcaatcactgcttcttctactttttctcaaacaacc |
38607967 |
T |
|
| Q |
119 |
atggcaagctcttcaaccttttcttctcttcgattctcgatgctcttcgcaatcttcttcaccgtcatgctttctggtgacaaggtcaccgccactgaag |
218 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38607968 |
atggaaagctcttcaaccttttcttctcttcgattctcgatgctcttcgcaatcttcttcaccgtcatgctttccggtgacaaggtcaccgccactgaag |
38608067 |
T |
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| Q |
219 |
gtttcgaatcttcaatcccaccgctacctccacatgatcctcaagaacattcgttcttctctc |
281 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38608068 |
gtttcgaaccttcaatcccaccgctacctccacatgatcttcaagaacattcgttcttctctc |
38608130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 38792651 - 38792913
Alignment:
| Q |
19 |
acttcactctgcatttcatcctcattccattcattttccctctctcagaattgaaatcaaatcttcaatcactgcttcttctactttttctctaacaacc |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38792651 |
acttcactctgcatttcatcctcgttccattcattttccctctctcagaattgaaatcaaatcttcaatcactgcttcttctactttttctcaaacaacc |
38792750 |
T |
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| Q |
119 |
atggcaagctcttcaaccttttcttctcttcgattctcgatgctcttcgcaatcttcttcaccgtcatgctttctggtgacaaggtcaccgccactgaag |
218 |
Q |
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| T |
38792751 |
atggaaagctcttcaaccttttcttctcttcgattctcgatgctcttcgcaatcttcttcaccgtcatgctttccggtgacaaggtcaccgccactgaag |
38792850 |
T |
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| Q |
219 |
gtttcgaatcttcaatcccaccgctacctccacatgatcctcaagaacattcgttcttctctc |
281 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38792851 |
gtttcgaaccttcaatcccaccgctacctccacatgatcttcaagaacattcgttcttctctc |
38792913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 111 - 281
Target Start/End: Complemental strand, 38122166 - 38121993
Alignment:
| Q |
111 |
taacaaccatggcaagctcttcaaccttttcttctcttcgattctcgatgctcttc---gcaatcttcttcaccgtcatgctttctggtgacaaggtcac |
207 |
Q |
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|||| ||||||| || ||||||||||||||| ||| | |||||||| ||||||||| |||||||||||||||| ||||||||| |||||| ||||||| |
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| T |
38122166 |
taaccaccatggaaaactcttcaaccttttcctctatgcgattctctatgctcttcttcgcaatcttcttcaccgccatgctttccggtgacgaggtcac |
38122067 |
T |
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| Q |
208 |
cgccactgaaggtttcgaatcttcaatcccaccgctacctccacatgatcctcaagaacattcgttcttctctc |
281 |
Q |
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|||||||||||| ||||| ||||| ||||||||| |||||| || |||| ||||||||||||||||||||||| |
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| T |
38122066 |
cgccactgaaggaatcgaagcttcattcccaccgccacctccgcacgatcttcaagaacattcgttcttctctc |
38121993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 38607252 - 38607350
Alignment:
| Q |
19 |
acttcactctgcatttcatcctcattccattcattttccctctctcagaattgaaatcaaatcttcaatcactgcttcttctactttttctctaacaac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||| |||||||||||||| |
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| T |
38607252 |
acttcactctgcatttcatcctcattccattcattttccctctctcataattgaaatcaaatctttaatcaccgcttcttctacgttttctctaacaac |
38607350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 117 - 281
Target Start/End: Complemental strand, 28731734 - 28731567
Alignment:
| Q |
117 |
ccatggcaagctcttcaaccttttcttctcttcgattctcgatgctcttc---gcaatcttcttcaccgtcatgctttctggtgacaaggtcaccgccac |
213 |
Q |
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|||||| || ||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||| ||||||||| |||||| ||||||||||| |
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| T |
28731734 |
ccatggaaaactcttcaaccttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttccggtgacgttgtcaccgccac |
28731635 |
T |
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| Q |
214 |
tgaaggtttcgaatcttcaatcccaccgctacctccacatgatcctcaagaacattcgttcttctctc |
281 |
Q |
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|||||| ||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
28731634 |
tgaaggaatcgaagcttcattcccaccgccacctccacatgatcttcaagaacattcgttcttctctc |
28731567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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