View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21564_low_14 (Length: 226)
Name: NF21564_low_14
Description: NF21564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21564_low_14 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 35353629 - 35353417
Alignment:
| Q |
11 |
cacagacaaaacacactacaaaaaagtgatataacacnnnnnnnnttgtggatcgacacttttacccacgtccatggaaacagtccaaccaaatattcgt |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35353629 |
cacacacaaaacacactacaaaaaagtgatataacacaaaaaaaattgtggatcgacacttttacccacgtccatggcaacagtccaaccaaatattcgt |
35353530 |
T |
|
| Q |
111 |
catctcaaataagattacaagttcaatagaaaattccttcnnnnnnnnnnnnnnnngttcaataaaaaatatgaaaccctctcaactatgattaccaccc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||| |||||||| |
|
|
| T |
35353529 |
catctcaaataagattacaagttcaatagaaaattccttc---aaaaaaaaaaaaagttcaatagaaaatatgaaaccctctccactatgtgtaccaccc |
35353433 |
T |
|
| Q |
211 |
caaaaattcgtatacc |
226 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
35353432 |
caaaaattcgtatacc |
35353417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 35352355 - 35352293
Alignment:
| Q |
80 |
gtccatggaaacagtccaaccaaatattcgtcatctcaaataagattacaagttcaatagaaa |
142 |
Q |
| |
|
||||||||||||| |||||| || ||||| |||||||||||||||||||| || ||||||| |
|
|
| T |
35352355 |
gtccatggaaacactccaacaaactattcaatatctcaaataagattacaagctctatagaaa |
35352293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University