View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21564_low_3 (Length: 501)
Name: NF21564_low_3
Description: NF21564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21564_low_3 |
 | |
|
| [»] scaffold0725 (1 HSPs) |
| | |
|
| [»] scaffold0088 (1 HSPs) |
| | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 30 - 481
Target Start/End: Original strand, 34293005 - 34293468
Alignment:
| Q |
30 |
agaactataaattcaaattcctttttgtctatagaatgagacttcatttctttattttatctacagaatgagatcaatcctttgttagattatcgcatct |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34293005 |
agaactataaattcaaattcctttttgtctatagaatgagacttcatttctttattttatctacagaatgagatcaatcctttgttagattatcgcatct |
34293104 |
T |
|
| Q |
130 |
cagtactcattagttctatttttctagtaatcattcatgccttaatatcaattttaaatattcatataggatttacagt--nnnnnnnnnnntcaatttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34293105 |
cagtactcattagttctatttttctagtaatcattcatgccttaatatcaattttaaatattcatataggatttacagtaaaaaaaataatatcaatttt |
34293204 |
T |
|
| Q |
228 |
aagtgtgagagttacacttagagtttcactcattcaataacatcaattttatgtgtgagagtttcacttagtgttcctcttcgaaacggtgacaactttt |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34293205 |
aagtgtgagagttacacttagagtttcactcattcaataacatcaattttatgtgtgagagtttcacttagtgttcctcttcgaaacggtgacaactttt |
34293304 |
T |
|
| Q |
328 |
tt----------cgtcgcgtgttctattttctattggtgtgttgtggtgtagtagggcacgattttggcgttgacagaagatgaaggtggtgatgacgtg |
417 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34293305 |
tttgtttcgacctgtcgcgtgttctattttctattggtgtgttgtggtggagtagggcacgattttggcgttgatagaagatgaaggtggtgatgacgtg |
34293404 |
T |
|
| Q |
418 |
gtggttttgcagtggtgtcgacaatgttgttttggtggatcggtggagagatgagtctgactta |
481 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
34293405 |
gtggttttgcagtggtgtcgacaatgctgttttggtggatcggtggagagaagagactgactta |
34293468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 351 - 481
Target Start/End: Complemental strand, 32979585 - 32979455
Alignment:
| Q |
351 |
ttggtgtgttgtggtgtagtagggcacgattttggcgttgacagaagatgaaggtggtgatgacgtggtggttttgcagtggtgtcgacaatgttgtttt |
450 |
Q |
| |
|
|||||||||||||||| |||||| || | |||||||| ||| || || |||||||||||||||| |||||||| |||||||||| |||| ||| |||||| |
|
|
| T |
32979585 |
ttggtgtgttgtggtggagtaggtcatggttttggcggtgataggaggtgaaggtggtgatgacatggtggttgtgcagtggtggcgacgatgctgtttt |
32979486 |
T |
|
| Q |
451 |
ggtggatcggtggagagatgagtctgactta |
481 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |
|
|
| T |
32979485 |
ggtggatcggtggagagaagagtctgactta |
32979455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 334 - 480
Target Start/End: Complemental strand, 10366137 - 10365992
Alignment:
| Q |
334 |
gcgtgttctattttctattggtgtgttgtggtgtagtagggcacgattttggcgttgacagaagatgaaggtggtgatgacgtggtggttttgcagtggt |
433 |
Q |
| |
|
||||||| |||||||| ||| ||||||||||| ||||||||||| ||||| | ||| ||||| ||||||||||||||||| || ||||||||| |||| |
|
|
| T |
10366137 |
gcgtgttttattttctggtggggtgttgtggtggagtagggcacggttttgcagatgatagaaggtgaaggtggtgatgacgcggaggttttgcaatggt |
10366038 |
T |
|
| Q |
434 |
gtcgacaatgttgttttggtggatcggtggagagatgagtctgactt |
480 |
Q |
| |
|
||||| ||| || ||||||||||||||||||||| ||||||||||| |
|
|
| T |
10366037 |
gtcgatgatgctg-tttggtggatcggtggagagaagagtctgactt |
10365992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0725 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0725
Description:
Target: scaffold0725; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 334 - 481
Target Start/End: Complemental strand, 1444 - 1297
Alignment:
| Q |
334 |
gcgtgttctattttctattggtgtgttgtggtgtagtagggcacgattttggcgttgacagaagatgaaggtggtgatgacgtggtggttttgcagtggt |
433 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
1444 |
gcgtgttttattttctattggtgtgttgtggtggattagggcacgattttggcgttgatagaaggtgaagagggtgatgacgtggtggttttgcagtggt |
1345 |
T |
|
| Q |
434 |
gtcgacaatgttgttttggtggatcggtggagagatgagtctgactta |
481 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||| || ||||||||| |
|
|
| T |
1344 |
gtcgatgatgctgttttggtggatcggtggagagaagaatctgactta |
1297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0088 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0088
Description:
Target: scaffold0088; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 334 - 481
Target Start/End: Complemental strand, 27360 - 27213
Alignment:
| Q |
334 |
gcgtgttctattttctattggtgtgttgtggtgtagtagggcacgattttggcgttgacagaagatgaaggtggtgatgacgtggtggttttgcagtggt |
433 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||| ||||| ||||||||||||||| |||||||||||| |
|
|
| T |
27360 |
gcgtgttttattttctattggtgtgctgtggtggagtagggcacgattttggcgttgatagaaggtgaagagggtgatgacgtggtgattttgcagtggt |
27261 |
T |
|
| Q |
434 |
gtcgacaatgttgttttggtggatcggtggagagatgagtctgactta |
481 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||| || ||||||||| |
|
|
| T |
27260 |
gtcgacgatgctgttttggtggatcggtggagagaagaatctgactta |
27213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 334 - 480
Target Start/End: Complemental strand, 47897026 - 47896880
Alignment:
| Q |
334 |
gcgtgttctattttctattggtgtgttgtggtgtagtagggcacgattttggcgttgacagaagatgaaggtggtgatgacgtggtggttttgcagtggt |
433 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| ||||||||||| |||||||| ||| |||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
47897026 |
gcgtgttttattttctgttggtgtgttgtggtggagtagggcacggttttggcgatgatagaacgtgaaggtggtgatgacgtggtggttttgtagtggt |
47896927 |
T |
|
| Q |
434 |
gtcgacaatgttgttttggtggatcggtggagagatgagtctgactt |
480 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
47896926 |
gtcgacgatgctgttttggtggatcggtggagagaagagtctgactt |
47896880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 337 - 480
Target Start/End: Complemental strand, 8039562 - 8039422
Alignment:
| Q |
337 |
tgttctattttctattggtgtgttgtggtgtagtagggcacgattttggcgttgacagaagatgaaggtggtgatgacgtggtggttttgcagtggtgtc |
436 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||| ||||| | |||||||| ||| ||||| ||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
8039562 |
tgttttattttctggtggtgtgttgtgg---agtggggcaaggttttggcgatgatagaaggtgaaggtggtgatgacgcggtggttttgcaatggtgtc |
8039466 |
T |
|
| Q |
437 |
gacaatgttgttttggtggatcggtggagagatgagtctgactt |
480 |
Q |
| |
|
|| ||| ||||||||||||||| |||||||| |||| |||||| |
|
|
| T |
8039465 |
gaagatgatgttttggtggatcgatggagagaagagtatgactt |
8039422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 334 - 480
Target Start/End: Original strand, 27786483 - 27786629
Alignment:
| Q |
334 |
gcgtgttctattttctattggtgtgttgtggtgtagtagggcacgattttggcgttgacagaagatgaaggtggtgatgacgtggtggttttgcagtggt |
433 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| |||||| ||| |||| ||| | | || || ||||||||||||| |||||||| |||| ||||||| |
|
|
| T |
27786483 |
gcgtgttctattttttgttggtgtgttgtggtggagtaggtcacagtttttgcgattataggaggtgaaggtggtgataacgtggtgattttacagtggt |
27786582 |
T |
|
| Q |
434 |
gtcgacaatgttgttttggtggatcggtggagagatgagtctgactt |
480 |
Q |
| |
|
| |||| ||| |||||||||||||| || |||||| ||||| ||||| |
|
|
| T |
27786583 |
ggcgacgatgatgttttggtggatcagttgagagaagagtccgactt |
27786629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 334 - 481
Target Start/End: Complemental strand, 9567146 - 9566998
Alignment:
| Q |
334 |
gcgtgttctattttctattggtgtgttgtggtgtagtagggcacgattttggcgttgacagaagatgaa-ggtggtgatgacgtggtggttttgcagtgg |
432 |
Q |
| |
|
||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||||| |
|
|
| T |
9567146 |
gcgtgttttattttatattggtgtgttgtggtggagtagggcacgattttggcgttgatagaaggtgaaaggtggtgacgacgtggtggttttgcagtgg |
9567047 |
T |
|
| Q |
433 |
tgtcgacaatgttgttttggtggatcggtggagagatgagtctgactta |
481 |
Q |
| |
|
||||||| ||| |||||||||| |||| |||||||| |||||| ||||| |
|
|
| T |
9567046 |
tgtcgacgatgctgttttggtgaatcgatggagagaagagtctaactta |
9566998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 415 - 480
Target Start/End: Complemental strand, 11366985 - 11366920
Alignment:
| Q |
415 |
gtggtggttttgcagtggtgtcgacaatgttgttttggtggatcggtggagagatgagtctgactt |
480 |
Q |
| |
|
|||||||||||||||||||||| || ||| |||||||||||||| ||||||||| |||||||||| |
|
|
| T |
11366985 |
gtggtggttttgcagtggtgtcaacgatgctgttttggtggatcagtggagagaaaagtctgactt |
11366920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 409
Target Start/End: Complemental strand, 11367054 - 11366980
Alignment:
| Q |
334 |
gcgtgttctattttctattggtgtgttgtggtgtagtagggcacgattttggcgttgacagaagatgaaggtggtg |
409 |
Q |
| |
|
||||||| |||||| | ||||| |||||||||| || |||||||| |||||||| ||| ||||| ||||||||||| |
|
|
| T |
11367054 |
gcgtgttttattttttgttggt-tgttgtggtggaggagggcacggttttggcgatgatagaaggtgaaggtggtg |
11366980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 334 - 480
Target Start/End: Complemental strand, 11387804 - 11387658
Alignment:
| Q |
334 |
gcgtgttctattttctattggtgtgttgtggtgtagtagggcacgattttggcgttgacagaagatgaaggtggtgatgacgtggtggttttgcagtggt |
433 |
Q |
| |
|
||||||| |||||||| || ||||||||||||| |||| |||| ||||||| || ||| ||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
11387804 |
gcgtgttttattttctgtttgtgtgttgtggtggagtatggcatgattttgacgatgatagaaggtgaaggtgatgatgacgtggtggttttgcagtggt |
11387705 |
T |
|
| Q |
434 |
gtcgacaatgttgttttggtggatcggtggagagatgagtctgactt |
480 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11387704 |
gtcgactatgctgttttggtggatcggtggagagaagagtctgactt |
11387658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 334 - 480
Target Start/End: Original strand, 46742669 - 46742815
Alignment:
| Q |
334 |
gcgtgttctattttctattggtgtgttgtggtgtagtagggcacgattttggcgttgacagaagatgaaggtggtgatgacgtggtggttttgcagtggt |
433 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||| || |||||||| ||| ||| |||||||||||||||||||||| |||| || |||| |
|
|
| T |
46742669 |
gcgtgttctattttctgttggtgtgttgtggtggagtaggtcatagttttggcggtgatgtaaggtgaaggtggtgatgacgtggtgattttacaatggt |
46742768 |
T |
|
| Q |
434 |
gtcgacaatgttgttttggtggatcggtggagagatgagtctgactt |
480 |
Q |
| |
|
| |||| ||| ||||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
46742769 |
ggcgacgatgctgttttggtggattggtggagagaagagtccgactt |
46742815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 351 - 480
Target Start/End: Complemental strand, 270676 - 270547
Alignment:
| Q |
351 |
ttggtgtgttgtggtgtagtagggcacgattttggcgttgacagaagatgaaggtggtgatgacgtggtggttttgcagtggtgtcgacaatgttgtttt |
450 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
270676 |
ttggcgtgttgtggtggagtagggcacggttttggcgatgatagaaggtgaaggtggtgatgacgtggtggttttgcagtggtgtcgacgatactgtttt |
270577 |
T |
|
| Q |
451 |
ggtggatcggtggagagatgagtctgactt |
480 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |
|
|
| T |
270576 |
ggtggatcggtggagagaagagtctgactt |
270547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 334 - 480
Target Start/End: Complemental strand, 38499555 - 38499409
Alignment:
| Q |
334 |
gcgtgttctattttctattggtgtgttgtggtgtagtagggcacgattttggcgttgacagaagatgaaggtggtgatgacgtggtggttttgcagtggt |
433 |
Q |
| |
|
||||||| |||||| | |||||||||||| ||| ||||||||||| |||||||| ||| ||||| |||||| || |||||||||||||||||| |||| | |
|
|
| T |
38499555 |
gcgtgttttattttttgttggtgtgttgtagtggagtagggcacggttttggcgatgatagaaggtgaaggcggcgatgacgtggtggttttgtagtgct |
38499456 |
T |
|
| Q |
434 |
gtcgacaatgttgttttggtggatcggtggagagatgagtctgactt |
480 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38499455 |
gtcgacgatgttgttttggtggatcggtggagagaagagtctgactt |
38499409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 336 - 480
Target Start/End: Complemental strand, 10182419 - 10182276
Alignment:
| Q |
336 |
gtgttctattttctattggtgtgttgtggtgtagtagggcacgattttggcgttgacagaagatgaaggtggtgatgacgtggtggttttgcagtggtgt |
435 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| |||| |||||||| ||| || || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10182419 |
gtgttctattttctgttggtgtgttgtggtggagtaggtcacggttttggcggtgataggaggtgaaggtggtgatgacgtggtggttttgcagtggtgg |
10182320 |
T |
|
| Q |
436 |
cgacaatgttgttttggtggatcggtggagagatgagtctgactt |
480 |
Q |
| |
|
|||| ||| | |||||||||||||||||||||| ||||| ||||| |
|
|
| T |
10182319 |
cgacgatgct-ttttggtggatcggtggagagaagagtccgactt |
10182276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 334 - 480
Target Start/End: Complemental strand, 1533631 - 1533485
Alignment:
| Q |
334 |
gcgtgttctattttctattggtgtgttgtggtgtagtagggcacgattttggcgttgacagaagatgaaggtggtgatgacgtggtggttttgcagtggt |
433 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||| || |||||||| ||| ||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1533631 |
gcgtgttctattttctgttggtgtgttgtggtggagtaggtcatagttttggcggtgatgtaaggtgaaggtggtgatgacgtggtggttttacagtggt |
1533532 |
T |
|
| Q |
434 |
gtcgacaatgttgttttggtggatcggtggagagatgagtctgactt |
480 |
Q |
| |
|
| |||| ||| |||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
1533531 |
ggcgacgatgctgttttggtggatcggtggagagaagagtccgactt |
1533485 |
T |
|
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