View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21564_low_4 (Length: 481)
Name: NF21564_low_4
Description: NF21564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21564_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 38708033 - 38708493
Alignment:
| Q |
1 |
ttggagataaaacatttaatatgtttggtccatgggaaagagctacaaatttggtctttaaatatttcaaatgtaggtcacattagtcatttataaagtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38708033 |
ttggagataaaacatttaatatgtttggtccatgggaaagagctacaaatttggtctttaaatatttcaaatgtcggtcacattagtcatttataaagtc |
38708132 |
T |
|
| Q |
101 |
tctgttgagatttatttaacctacatttgaaatttggtttttcagacttcattgaatgcgagttgttttttcctttcgattcttgtttagacttatagtc |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38708133 |
tctgttgagatttatttaacctgcatttgaaatttggtttttcagacttcattgaatgcgagttgttttttcctttcgattcttgtttagacttatagtc |
38708232 |
T |
|
| Q |
201 |
ttttacttatcataaatttaaaatatgcatctcaggtatcactgattgtgaaatgatttttcaggtatacagtcattatcatgacctccaaccttggtgc |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38708233 |
ttttacttatcgtaaatttaaaatatgcatctcaggtgtcactgattgtgaaatgatttttcaggtatacagtcattatcatgacctcaaaccttggtgc |
38708332 |
T |
|
| Q |
301 |
cgagcatctcataagtggactttcaggaaaatgcaccatgcaagttgctagtgatcgagtaatgcaggaagtnnnnnnncatttcaggccagaattgttg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
38708333 |
cgagcatctcataagtggactttcaggaaaatgcaccatgcaagttgctcgtgatcgagtaatgcaggaagtaaaaaaacatttcagaccagaattgttg |
38708432 |
T |
|
| Q |
401 |
aattcactggatgaagttgttgtatttgatcatctatctcacgagtaattgaggaaggttg |
461 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38708433 |
aattcgctggatgaagttgttgtatttgatcatctatctcatgagtaattgaggaaggttg |
38708493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 10046259 - 10046521
Alignment:
| Q |
16 |
ttaatatgtttggtccatgggaaagagctacaaatttggtctttaaatatttcaaatgtaggtcacattagtcatttataaagtctctgttgagatttat |
115 |
Q |
| |
|
|||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| | ||| |||||||||| || |||| ||||||||||||||| |
|
|
| T |
10046259 |
ttaatacgtttggtccatggaaaa-agctacaaatttggtctttaaatatttcaaatgtcgatcaaattagtcattaatgaagtatctgttgagatttat |
10046357 |
T |
|
| Q |
116 |
ttaacctacatttgaaatttggtttttcagacttcattgaatgcgagttgt-----------tttttcctttcgattcttgtttagacttatagtctttt |
204 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| || ||||||||||||| |||||||| |
|
|
| T |
10046358 |
ttaaccgacatttgaaatttggtttttcagacttcattgaatgcgagttttttttttctttctttttcctttcaatacttgtttagacttgtagtctttc |
10046457 |
T |
|
| Q |
205 |
acttatcataaatttaaaatatgcatctcaggtatcactgattgtgaaatgatttttcaggtat |
268 |
Q |
| |
|
||||||| | |||| || |||||||||||| | ||| ||||||||||||| ||||||||||| |
|
|
| T |
10046458 |
acttatcgtgaattaaagatatgcatctcaagcgtcatcgattgtgaaatgagttttcaggtat |
10046521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 269 - 461
Target Start/End: Original strand, 10046696 - 10046888
Alignment:
| Q |
269 |
acagtcattatcatgacctccaaccttggtgccgagcatctcataagtggactttcaggaaaatgcaccatgcaagttgctagtgatcgagtaatgcagg |
368 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||| || ||||||||||||||| | || |||||||||| || |
|
|
| T |
10046696 |
acagtcattatcatgacctcaaacctcggcgccgatcatctcataagtggactttcaggaaattgtaccatgcaagttgctcgcgaccgagtaatgctgg |
10046795 |
T |
|
| Q |
369 |
aagtnnnnnnncatttcaggccagaattgttgaattcactggatgaagttgttgtatttgatcatctatctcacgagtaattgaggaaggttg |
461 |
Q |
| |
|
|||| |||||| ||||||||||||||||| || || |||||||||||||| |||| |||||||||||| ||||||||||||||| |
|
|
| T |
10046796 |
aagtaaaaaagcatttccggccagaattgttgaataggctagacgaagttgttgtattcgatccactatctcacgagcaattgaggaaggttg |
10046888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 7e-47; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 269 - 461
Target Start/End: Complemental strand, 740182 - 739990
Alignment:
| Q |
269 |
acagtcattatcatgacctccaaccttggtgccgagcatctcataagtggactttcaggaaaatgcaccatgcaagttgctagtgatcgagtaatgcagg |
368 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||| |||||| |||||||| | ||| ||||||||||| |
|
|
| T |
740182 |
acagtcattatcatgacctcaaaccttggttccgagcatctcctaagtggactttcaggaaaatgtaccatggaagttgctcgcgataaagtaatgcagg |
740083 |
T |
|
| Q |
369 |
aagtnnnnnnncatttcaggccagaattgttgaattcactggatgaagttgttgtatttgatcatctatctcacgagtaattgaggaaggttg |
461 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||| |||||||||||||| || | ||| |||||| || ||||||||||||||| |
|
|
| T |
740082 |
aagtgagaaatcatttcaggccagaattgttgaatcggctggacgaagttgttgtattcgaccctctttctcacaagcaattgaggaaggttg |
739990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 272 - 372
Target Start/End: Complemental strand, 42449402 - 42449302
Alignment:
| Q |
272 |
gtcattatcatgacctccaaccttggtgccgagcatctcataagtggactttcaggaaaatgcaccatgcaagttgctagtgatcgagtaatgcaggaag |
371 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| ||||| ||||| ||| ||||||||||||||||||| |
|
|
| T |
42449402 |
gtcattatcatgacctcgaaccttggtgccgatcatctcttaagtggactttcaggaaaatgtaccatccaagtagctcacgatcgagtaatgcaggaag |
42449303 |
T |
|
| Q |
372 |
t |
372 |
Q |
| |
|
| |
|
|
| T |
42449302 |
t |
42449302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 276 - 372
Target Start/End: Complemental strand, 742268 - 742172
Alignment:
| Q |
276 |
ttatcatgacctccaaccttggtgccgagcatctcataagtggactttcaggaaaatgcaccatgcaagttgctagtgatcgagtaatgcaggaagt |
372 |
Q |
| |
|
||||||||||||| |||||||| || || |||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
742268 |
ttatcatgacctcgaaccttggcgctgatcatctccaaagtggactttcaggaaaatgtaccatgcaagttgctcacgatcgagtaatgcaggaagt |
742172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 42449751 - 42449709
Alignment:
| Q |
38 |
aagagctacaaatttggtctttaaatatttcaaatgtaggtca |
80 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||| ||||| |
|
|
| T |
42449751 |
aagagctacaaagttggtctttcaatatttcaaatgtcggtca |
42449709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 42449662 - 42449602
Alignment:
| Q |
174 |
tttcgattcttgtttagacttatagtcttttacttatcataaatttaaaatatgcatctca |
234 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| ||||||| | | || |||||||||||||| |
|
|
| T |
42449662 |
tttcaattctagtttagacttatagtctttaacttatcttgagttcgaaatatgcatctca |
42449602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 278 - 461
Target Start/End: Original strand, 45468366 - 45468549
Alignment:
| Q |
278 |
atcatgacctccaaccttggtgccgagcatctcataagtggactttcaggaaaatgcaccatgcaagttgctagtgatcgagtaatgcaggaagtnnnnn |
377 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| | |||||||||||||||||||| |||||||||| |||| | |||||||| ||||||||||| |
|
|
| T |
45468366 |
atcatgacctctaaccttggtgctgagcatctcttgagtggactttcaggaaaatgtaccatgcaagctgctcgcgatcgagtgatgcaggaagtaagaa |
45468465 |
T |
|
| Q |
378 |
nncatttcaggccagaattgttgaattcactggatgaagttgttgtatttgatcatctatctcacgagtaattgaggaaggttg |
461 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||| || ||| ||||||| ||||||| |
|
|
| T |
45468466 |
ggcatttcaggccagaattgttgaaccgactggacgaagttgttgtatttgatcctctatcacatgagcaattgagaaaggttg |
45468549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University