View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21564_low_7 (Length: 402)
Name: NF21564_low_7
Description: NF21564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21564_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 42035064 - 42035270
Alignment:
| Q |
18 |
gttttactgtgtaattagtattgatttcacagatactttgtattgagtaccaatctcttttgctagggtggtgattatctaaaataaatagtttttagaa |
117 |
Q |
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| T |
42035064 |
gttttactgtgtaattagtattgatttcacagatactttgtactgagtaccaatctcttttgctagggtggtgattatctaaaataaatagtttttagaa |
42035163 |
T |
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| Q |
118 |
ggatggttttttgagggaattagaatatgattgaagtcgcccaatagcatcacaattggacaattcgagacctcaagtcacaaaatagacctacaagcct |
217 |
Q |
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| T |
42035164 |
ggatggttttttgaggtaattagaatatgattgaagtcgcccaatagcatcacaattggacaattcgagacctcaagtcacaaaatagacctacaagcct |
42035263 |
T |
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| Q |
218 |
tctatta |
224 |
Q |
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||||||| |
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| T |
42035264 |
tctatta |
42035270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 221 - 393
Target Start/End: Original strand, 42035461 - 42035634
Alignment:
| Q |
221 |
attaattaattaatataagtaaatgtttcaccgtatgttaatataatcagtgtaagactattagaagttcataagatgtgtaacacatgtacgaatgaag |
320 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
42035461 |
attaattaattaatataagtaaatgtttcaccatatgttaatataatgagtgtaagactattataagttcataagatgtgtaacacatgtaagaatgaag |
42035560 |
T |
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| Q |
321 |
aaaagttgtgtttataaaaagcctggttggtgct-gtttgtggggatatgaggagagggtttgccagttcattt |
393 |
Q |
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||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42035561 |
aaaagttgtgtttataaaaagcctgtttgttgctggtttgtggggatatgaggagagggtttgccagttcattt |
42035634 |
T |
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