View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21564_low_9 (Length: 374)

Name: NF21564_low_9
Description: NF21564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21564_low_9
NF21564_low_9
[»] chr6 (15 HSPs)
chr6 (11-260)||(3134143-3134384)
chr6 (258-358)||(13154210-13154311)
chr6 (258-358)||(13159066-13159167)
chr6 (259-358)||(33341876-33341976)
chr6 (259-356)||(6027543-6027640)
chr6 (261-360)||(6136079-6136178)
chr6 (260-359)||(25421600-25421699)
chr6 (259-350)||(34165161-34165253)
chr6 (261-357)||(34167376-34167472)
chr6 (290-360)||(16555160-16555228)
chr6 (290-360)||(16578327-16578395)
chr6 (290-360)||(16616985-16617053)
chr6 (290-360)||(16631716-16631784)
chr6 (290-360)||(16653403-16653471)
chr6 (290-360)||(27648144-27648210)
[»] chr4 (6 HSPs)
chr4 (261-359)||(8395898-8395996)
chr4 (259-358)||(5136361-5136461)
chr4 (259-359)||(7122977-7123077)
chr4 (259-359)||(8393689-8393789)
chr4 (261-358)||(5138586-5138684)
chr4 (261-359)||(7125196-7125294)
[»] chr3 (15 HSPs)
chr3 (259-360)||(25637723-25637824)
chr3 (259-358)||(4598297-4598396)
chr3 (259-358)||(4600518-4600617)
chr3 (261-350)||(10211698-10211788)
chr3 (259-350)||(10056522-10056614)
chr3 (259-350)||(10058744-10058836)
chr3 (259-350)||(10060966-10061058)
chr3 (259-350)||(10063188-10063280)
chr3 (259-350)||(10065410-10065502)
chr3 (259-350)||(10209478-10209570)
chr3 (260-350)||(10067609-10067700)
chr3 (261-359)||(3617744-3617842)
chr3 (290-360)||(45283278-45283345)
chr3 (313-360)||(54635415-54635462)
chr3 (290-360)||(6716792-6716859)
[»] chr8 (5 HSPs)
chr8 (259-358)||(15290819-15290919)
chr8 (259-358)||(15471188-15471288)
chr8 (261-358)||(42575100-42575198)
chr8 (290-360)||(3439792-3439861)
chr8 (290-360)||(25690246-25690313)
[»] chr7 (8 HSPs)
chr7 (261-359)||(18388536-18388634)
chr7 (259-359)||(6594332-6594432)
chr7 (259-359)||(18391970-18392070)
chr7 (261-359)||(6592116-6592214)
chr7 (261-359)||(32060098-32060196)
chr7 (261-355)||(1560441-1560535)
chr7 (290-360)||(20344188-20344255)
chr7 (317-360)||(24790290-24790333)
[»] chr5 (11 HSPs)
chr5 (259-359)||(40380385-40380485)
chr5 (259-358)||(16544706-16544806)
chr5 (261-360)||(10593551-10593650)
chr5 (260-359)||(25078415-25078514)
chr5 (260-359)||(25136384-25136483)
chr5 (261-359)||(40382596-40382694)
chr5 (259-358)||(16546928-16547028)
chr5 (288-350)||(22536101-22536160)
chr5 (291-356)||(29750969-29751033)
chr5 (292-360)||(29720654-29720721)
chr5 (292-360)||(29722814-29722881)
[»] chr2 (3 HSPs)
chr2 (260-355)||(13655804-13655899)
chr2 (261-359)||(12647162-12647260)
chr2 (317-360)||(6266980-6267023)
[»] scaffold0137 (1 HSPs)
scaffold0137 (259-359)||(6569-6669)
[»] scaffold0565 (1 HSPs)
scaffold0565 (260-359)||(2379-2478)
[»] chr1 (4 HSPs)
chr1 (261-359)||(44203926-44204024)
chr1 (291-360)||(9987490-9987558)
chr1 (291-360)||(21054246-21054314)
chr1 (290-360)||(9036708-9036775)
[»] scaffold1808 (1 HSPs)
scaffold1808 (304-359)||(159-214)
[»] scaffold0674 (1 HSPs)
scaffold0674 (304-359)||(3545-3600)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 3134143 - 3134384
Alignment:
Q  11 caaaggggtacataactctattattaactatattaactaacacttttaccaagctgacatcactcacactccaaggacatcaaatgtgaaagatgagaaa 110  Q
    |||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3134143 caaaggggtacataactctattatt--------taactaacacttttaccaagctgacatcactcacactccaaggacatcaaatgtgaaagatgagaag 3134234  T
Q  111 ccggaagctttaacttatgcatacatagatgtttcgaacacaataaatatgactaggagatgctgaaatagaacatatggtgattcaaatcttgttccaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3134235 ccggaagctttaacttatgcatacatagatgtttcgaacacaataaatatgactaggagatgctgaaatagaacatatggtgattcaaatcttgttccaa 3134334  T
Q  211 ttgtttgtctagtactcttgtataacgaaacagacagaattaaaagttat 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3134335 ttgtttgtctagtactcttgtataacgaaacagacagaattaaaagttat 3134384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 258 - 358
Target Start/End: Complemental strand, 13154311 - 13154210
Alignment:
Q  258 tattgttgtgaatccccggacctccaagacc-ggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaa 356  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13154311 tattgttgtgaatcctcggacctccaagacccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaa 13154212  T
Q  357 ag 358  Q
    ||    
T  13154211 ag 13154210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 258 - 358
Target Start/End: Complemental strand, 13159167 - 13159066
Alignment:
Q  258 tattgttgtgaatccccggacctccaagacc-ggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaa 356  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13159167 tattgttgtgaatcctcggacctccaagacccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaa 13159068  T
Q  357 ag 358  Q
    ||    
T  13159067 ag 13159066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 259 - 358
Target Start/End: Original strand, 33341876 - 33341976
Alignment:
Q  259 attgttgtgaatccccggacctccaagacc-ggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaa 357  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33341876 attgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccaccaaacaaa 33341975  T
Q  358 g 358  Q
    |    
T  33341976 g 33341976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 259 - 356
Target Start/End: Complemental strand, 6027640 - 6027543
Alignment:
Q  259 attgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaa 356  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6027640 attgttgtgaatccccggatctccaagactggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagaggggtaaccacctaacaa 6027543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 261 - 360
Target Start/End: Original strand, 6136079 - 6136178
Alignment:
Q  261 tgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagtg 360  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  6136079 tgttgtgaatccccggacctccaaggccggatcgaaccataccaatacaaagaataatgatgtgtggagcaacggagagtggtaaccaccaaacaaagtg 6136178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 260 - 359
Target Start/End: Complemental strand, 25421699 - 25421600
Alignment:
Q  260 ttgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagt 359  Q
    ||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25421699 ttgttgtgaatccccgagcctccaaggccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccaccgaacaaagt 25421600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 259 - 350
Target Start/End: Complemental strand, 34165253 - 34165161
Alignment:
Q  259 attgttgtgaatccccggacctccaaga-ccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacc 350  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34165253 attgttgtgaatccccgaacctccaaggtccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacc 34165161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 261 - 357
Target Start/End: Complemental strand, 34167472 - 34167376
Alignment:
Q  261 tgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaa 357  Q
    |||||||||||||||  ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34167472 tgttgtgaatccccgagcctccaaggtcggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccaccaaacaaa 34167376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 16555228 - 16555160
Alignment:
Q  290 gatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagtg 360  Q
    ||||||||||||||||||| ||  ||||||||||||||||| | ||||||||||||||||| |||||||||    
T  16555228 gatcgaaccacaccaatactaa--ataatgatgtgtggagccaaggagagtggtaaccaccaaacaaagtg 16555160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 360
Target Start/End: Original strand, 16578327 - 16578395
Alignment:
Q  290 gatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagtg 360  Q
    ||||||||||||||||||| ||  ||||||||||||||||| | ||||||||||||||||| |||||||||    
T  16578327 gatcgaaccacaccaatactaa--ataatgatgtgtggagccaaggagagtggtaaccaccaaacaaagtg 16578395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 16617053 - 16616985
Alignment:
Q  290 gatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagtg 360  Q
    ||||||||||||||||||| ||  ||||||||||||||||| | ||||||||||||||||| |||||||||    
T  16617053 gatcgaaccacaccaatactaa--ataatgatgtgtggagccaaggagagtggtaaccaccaaacaaagtg 16616985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 16631784 - 16631716
Alignment:
Q  290 gatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagtg 360  Q
    ||||||||||||||||||| ||  ||||||||||||||||| | ||||||||||||||||| |||||||||    
T  16631784 gatcgaaccacaccaatactaa--ataatgatgtgtggagccaaggagagtggtaaccaccaaacaaagtg 16631716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 16653471 - 16653403
Alignment:
Q  290 gatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagtg 360  Q
    ||||||||||||||||||| ||  ||||||||||||||||| | ||||||||||||||||| |||||||||    
T  16653471 gatcgaaccacaccaatactaa--ataatgatgtgtggagccaaggagagtggtaaccaccaaacaaagtg 16653403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 27648210 - 27648144
Alignment:
Q  290 gatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagtg 360  Q
    |||||||||||||||||||||     ||||||||||||||| | ||||||||||||||||| |||||||||    
T  27648210 gatcgaaccacaccaatacaag----aatgatgtgtggagcaaaggagagtggtaaccaccgaacaaagtg 27648144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 261 - 359
Target Start/End: Complemental strand, 8395996 - 8395898
Alignment:
Q  261 tgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagt 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8395996 tgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccaccaaacaaagt 8395898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 259 - 358
Target Start/End: Complemental strand, 5136461 - 5136361
Alignment:
Q  259 attgttgtgaatccccggacctccaagacc-ggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaa 357  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5136461 attgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccaccaaacaaa 5136362  T
Q  358 g 358  Q
    |    
T  5136361 g 5136361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 259 - 359
Target Start/End: Complemental strand, 7123077 - 7122977
Alignment:
Q  259 attgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaag 358  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7123077 attgttgtgaatccccgaacctccaaggccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccaccgaacaaag 7122978  T
Q  359 t 359  Q
    |    
T  7122977 t 7122977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 259 - 359
Target Start/End: Complemental strand, 8393789 - 8393689
Alignment:
Q  259 attgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaag 358  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  8393789 attgttgtgaatccccggacctcaaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccaccaaacgaag 8393690  T
Q  359 t 359  Q
    |    
T  8393689 t 8393689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 261 - 358
Target Start/End: Complemental strand, 5138684 - 5138586
Alignment:
Q  261 tgttgtgaatccccggacctccaagacc-ggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaag 358  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5138684 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccaccaaacaaag 5138586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 261 - 359
Target Start/End: Complemental strand, 7125294 - 7125196
Alignment:
Q  261 tgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagt 359  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7125294 tgttgtgaatccccgaacctccaaggccggatcgaaccacaccaatataaagaataatgatgtgtggagcgacggagagtggtaaccaccgaacaaagt 7125196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 8e-46; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 259 - 360
Target Start/End: Complemental strand, 25637824 - 25637723
Alignment:
Q  259 attgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaag 358  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25637824 attgttgtgaatccccggacctccaaggtcggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaag 25637725  T
Q  359 tg 360  Q
    ||    
T  25637724 tg 25637723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 259 - 358
Target Start/End: Original strand, 4598297 - 4598396
Alignment:
Q  259 attgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaag 358  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4598297 attgttgtgaatccccgaacctccaaggtcggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccaccaaacaaag 4598396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 259 - 358
Target Start/End: Original strand, 4600518 - 4600617
Alignment:
Q  259 attgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaag 358  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4600518 attgttgtgaatccccgaacctccaaggtcggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccaccaaacaaag 4600617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 261 - 350
Target Start/End: Complemental strand, 10211788 - 10211698
Alignment:
Q  261 tgttgtgaatccccggacctccaagacc-ggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacc 350  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10211788 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacagagaataatgatgtgtggagcgacggagagtggtaaccacc 10211698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 259 - 350
Target Start/End: Complemental strand, 10056614 - 10056522
Alignment:
Q  259 attgttgtgaatccccggacctccaaga-ccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacc 350  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10056614 attgttgtgaatccccgaacctccaaggtccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacc 10056522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 259 - 350
Target Start/End: Complemental strand, 10058836 - 10058744
Alignment:
Q  259 attgttgtgaatccccggacctccaaga-ccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacc 350  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10058836 attgttgtgaatccccgaacctccaaggtccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacc 10058744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 259 - 350
Target Start/End: Complemental strand, 10061058 - 10060966
Alignment:
Q  259 attgttgtgaatccccggacctccaaga-ccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacc 350  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10061058 attgttgtgaatccccgaacctccaaggtccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacc 10060966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 259 - 350
Target Start/End: Complemental strand, 10063280 - 10063188
Alignment:
Q  259 attgttgtgaatccccggacctccaaga-ccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacc 350  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10063280 attgttgtgaatccccgaacctccaaggtccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacc 10063188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 259 - 350
Target Start/End: Complemental strand, 10065502 - 10065410
Alignment:
Q  259 attgttgtgaatccccggacctccaaga-ccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacc 350  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10065502 attgttgtgaatccccgaacctccaaggtccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacc 10065410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 259 - 350
Target Start/End: Complemental strand, 10209570 - 10209478
Alignment:
Q  259 attgttgtgaatccccggacctccaagacc-ggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacc 350  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  10209570 attgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacagagaataatgatgtgtggagtgacggagagtggtaaccacc 10209478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 260 - 350
Target Start/End: Complemental strand, 10067700 - 10067609
Alignment:
Q  260 ttgttgtgaatccccggacctccaaga-ccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacc 350  Q
    |||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10067700 ttgttgtgaatccccgaacctccaaggtccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacc 10067609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 261 - 359
Target Start/End: Complemental strand, 3617842 - 3617744
Alignment:
Q  261 tgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagt 359  Q
    |||||||||||||||  ||||||||  |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||    
T  3617842 tgttgtgaatccccgagcctccaaggtcggatcgaaccacaccaatacaaataagaatgatgtgtggagcgacggagagtggtaaccaccgaacaaagt 3617744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 45283345 - 45283278
Alignment:
Q  290 gatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagtg 360  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||| |||||||||| |||||||||    
T  45283345 gatcgaaccacaccaatacaaagaat---gatgtgtggagcgacggagagcggtaaccaccaaacaaagtg 45283278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 313 - 360
Target Start/End: Complemental strand, 54635462 - 54635415
Alignment:
Q  313 aataatgatgtgtggagcgacggagagtggtaaccacctaacaaagtg 360  Q
    |||||||||||||||||| | ||||||||||||||||| |||||||||    
T  54635462 aataatgatgtgtggagcaaaggagagtggtaaccaccaaacaaagtg 54635415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 6716859 - 6716792
Alignment:
Q  290 gatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagtg 360  Q
    ||||||||||||||||| |||||| |   |||||||||||| ||||| || |||||||||| |||||||||    
T  6716859 gatcgaaccacaccaatgcaaagagt---gatgtgtggagcaacggaaagcggtaaccaccaaacaaagtg 6716792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 259 - 358
Target Start/End: Complemental strand, 15290919 - 15290819
Alignment:
Q  259 attgttgtgaatccccggacctccaagacc-ggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaa 357  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15290919 attgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaa 15290820  T
Q  358 g 358  Q
    |    
T  15290819 g 15290819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 259 - 358
Target Start/End: Complemental strand, 15471288 - 15471188
Alignment:
Q  259 attgttgtgaatccccggacctccaagacc-ggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaa 357  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15471288 attgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaa 15471189  T
Q  358 g 358  Q
    |    
T  15471188 g 15471188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 261 - 358
Target Start/End: Original strand, 42575100 - 42575198
Alignment:
Q  261 tgttgtgaatccccggacctccaagacc-ggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaag 358  Q
    |||||||||||||||  ||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||    
T  42575100 tgttgtgaatccccgagcctccaagacccggatcgaaccacaccaatacaaactataatgatgtgtggagcgacggagagtggtaaccaccaaacaaag 42575198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 3439861 - 3439792
Alignment:
Q  290 gatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagtg 360  Q
    ||||||||||||||||||| || || |||||||||||||||||||||||| |||||||||| |||||||||    
T  3439861 gatcgaaccacaccaatactaaaaa-aatgatgtgtggagcgacggagagcggtaaccaccaaacaaagtg 3439792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 25690313 - 25690246
Alignment:
Q  290 gatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagtg 360  Q
    ||||||||||||||||||||||||||   |||||||||||| | ||||||||||||||||| |||||||||    
T  25690313 gatcgaaccacaccaatacaaagaat---gatgtgtggagcaaaggagagtggtaaccaccaaacaaagtg 25690246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 261 - 359
Target Start/End: Original strand, 18388536 - 18388634
Alignment:
Q  261 tgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagt 359  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18388536 tgttgtgaatccccgaacctccaaggccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccaccgaacaaagt 18388634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 259 - 359
Target Start/End: Original strand, 6594332 - 6594432
Alignment:
Q  259 attgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaag 358  Q
    |||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6594332 attgttgtgaatccccgagcctccaaggccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccaccaaacaaag 6594431  T
Q  359 t 359  Q
    |    
T  6594432 t 6594432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 259 - 359
Target Start/End: Original strand, 18391970 - 18392070
Alignment:
Q  259 attgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaag 358  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  18391970 attgttgtgaatccccgaacctccaaggccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacagagagtggtaaccaccgaacaaag 18392069  T
Q  359 t 359  Q
    |    
T  18392070 t 18392070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 261 - 359
Target Start/End: Original strand, 6592116 - 6592214
Alignment:
Q  261 tgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagt 359  Q
    |||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6592116 tgttgtgaatccccgagcctccaaggccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccaccaaacaaagt 6592214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 261 - 359
Target Start/End: Original strand, 32060098 - 32060196
Alignment:
Q  261 tgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagt 359  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32060098 tgttgtgaatccccgaacctccaaggccggatcgaaccacaccaatataaagaataatgatgtgtggagcgacggagagtggtaaccaccgaacaaagt 32060196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 261 - 355
Target Start/End: Original strand, 1560441 - 1560535
Alignment:
Q  261 tgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaaca 355  Q
    |||||||||||||||  ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1560441 tgttgtgaatccccgagcctccaaggtcggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccaccgaaca 1560535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 20344255 - 20344188
Alignment:
Q  290 gatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagtg 360  Q
    ||||||||||||||||| ||||||||   |||||||||||| | ||||||||||||||||| |||||||||    
T  20344255 gatcgaaccacaccaatgcaaagaat---gatgtgtggagcaaaggagagtggtaaccaccaaacaaagtg 20344188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 360
Target Start/End: Complemental strand, 24790333 - 24790290
Alignment:
Q  317 atgatgtgtggagcgacggagagtggtaaccacctaacaaagtg 360  Q
    |||||||||||||| ||||| ||||||||||||| |||||||||    
T  24790333 atgatgtgtggagcaacggaaagtggtaaccaccaaacaaagtg 24790290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 259 - 359
Target Start/End: Complemental strand, 40380485 - 40380385
Alignment:
Q  259 attgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaag 358  Q
    |||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40380485 attgttgtgaatccccgagcctccaaggccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccaccaaacaaag 40380386  T
Q  359 t 359  Q
    |    
T  40380385 t 40380385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 259 - 358
Target Start/End: Complemental strand, 16544806 - 16544706
Alignment:
Q  259 attgttgtgaatccccggacctccaag-accggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaa 357  Q
    |||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16544806 attgttgtgaatccccgagcctccaaggaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccaccaaacaaa 16544707  T
Q  358 g 358  Q
    |    
T  16544706 g 16544706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 261 - 360
Target Start/End: Complemental strand, 10593650 - 10593551
Alignment:
Q  261 tgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagtg 360  Q
    ||||||| ||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10593650 tgttgtgtatccccgtatctccaagatcggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccaccaaacaaagtg 10593551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 260 - 359
Target Start/End: Complemental strand, 25078514 - 25078415
Alignment:
Q  260 ttgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagt 359  Q
    |||||||||||||||  ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  25078514 ttgttgtgaatccccaaacctccaaggccggatcgaaccacaccaatacaaagaagaatgatgtgtggagcgacggagagtggtaaccaccgaacaaagt 25078415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 260 - 359
Target Start/End: Complemental strand, 25136483 - 25136384
Alignment:
Q  260 ttgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagt 359  Q
    |||||||||||||||  ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  25136483 ttgttgtgaatccccaaacctccaaggccggatcgaaccacaccaatacaaagaagaatgatgtgtggagcgacggagagtggtaaccaccgaacaaagt 25136384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 261 - 359
Target Start/End: Complemental strand, 40382694 - 40382596
Alignment:
Q  261 tgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagt 359  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  40382694 tgttgtgaatccccgagcctccaaggccggatcgaaccacaccaatacaaagaataatgatgtgtggagcggcggagagtggtaaccaccaaacaaagt 40382596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 259 - 358
Target Start/End: Complemental strand, 16547028 - 16546928
Alignment:
Q  259 attgttgtgaatccccggacctccaag-accggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaa 357  Q
    |||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  16547028 attgttgtgaatccccgagcctccaaggaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtgataaccaccaaacaaa 16546929  T
Q  358 g 358  Q
    |    
T  16546928 g 16546928  T

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Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 288 - 350
Target Start/End: Original strand, 22536101 - 22536160
Alignment:
Q  288 cggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacc 350  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||| ||||||||||    
T  22536101 cggatcgaaccacaccaatacaaagaat---gatgtgtggagcgacggagagcggtaaccacc 22536160  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 29750969 - 29751033
Alignment:
Q  291 atcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaa 356  Q
    ||||||||||||||||||||  |||| ||||||||||||| | ||||||||||||||||| |||||    
T  29750969 atcgaaccacaccaatacaagaaata-tgatgtgtggagcaaaggagagtggtaaccaccaaacaa 29751033  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 360
Target Start/End: Complemental strand, 29720721 - 29720654
Alignment:
Q  292 tcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagtg 360  Q
    |||||||||||||||||||  |||| || |||||||||| | ||||||||||||||||| |||||||||    
T  29720721 tcgaaccacaccaatacaagaaata-tgttgtgtggagcaaaggagagtggtaaccaccaaacaaagtg 29720654  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 360
Target Start/End: Complemental strand, 29722881 - 29722814
Alignment:
Q  292 tcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagtg 360  Q
    |||||||||||||||||||  |||| || |||||||||| | | ||||||||||||||| |||||||||    
T  29722881 tcgaaccacaccaatacaagaaata-tggtgtgtggagcaaagtagagtggtaaccaccaaacaaagtg 29722814  T

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Target: chr2 (Bit Score: 84; Significance: 8e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 260 - 355
Target Start/End: Original strand, 13655804 - 13655899
Alignment:
Q  260 ttgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaaca 355  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13655804 ttgttgtgaatccccggacctccaaggtcggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccaccgaaca 13655899  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 261 - 359
Target Start/End: Original strand, 12647162 - 12647260
Alignment:
Q  261 tgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagt 359  Q
    |||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12647162 tgttgtgaatccccgagcctccaaggccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccaccgaacaaagt 12647260  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 360
Target Start/End: Complemental strand, 6267023 - 6266980
Alignment:
Q  317 atgatgtgtggagcgacggagagtggtaaccacctaacaaagtg 360  Q
    |||||||||||||| | ||||||||||||||||| |||||||||    
T  6267023 atgatgtgtggagcaaaggagagtggtaaccaccaaacaaagtg 6266980  T

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Target: scaffold0137 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 259 - 359
Target Start/End: Complemental strand, 6669 - 6569
Alignment:
Q  259 attgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaag 358  Q
    |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  6669 attgttgtgaatccccgagtctccaagaccggatcgaaccacaccaatacaaagaataatgatatgtggagcgacggagagtggtaaccaccaaacaaag 6570  T
Q  359 t 359  Q
    |    
T  6569 t 6569  T

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Target: scaffold0565 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 260 - 359
Target Start/End: Original strand, 2379 - 2478
Alignment:
Q  260 ttgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagt 359  Q
    ||||||||||||||||  ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2379 ttgttgtgaatccccgagcctccaaggtcggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccaccaaacaaagt 2478  T

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Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 261 - 359
Target Start/End: Complemental strand, 44204024 - 44203926
Alignment:
Q  261 tgttgtgaatccccggacctccaagaccggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagt 359  Q
    |||||||||||||||  ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44204024 tgttgtgaatccccgagcctccaaggtcggatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccaccaaacaaagt 44203926  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 360
Target Start/End: Complemental strand, 9987558 - 9987490
Alignment:
Q  291 atcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagtg 360  Q
    |||||||||||||||||| || |||| ||||||||||||| | ||||||||||||||||| | |||||||    
T  9987558 atcgaaccacaccaatacgaaaaata-tgatgtgtggagcaaaggagagtggtaaccaccaatcaaagtg 9987490  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 360
Target Start/End: Complemental strand, 21054314 - 21054246
Alignment:
Q  291 atcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagtg 360  Q
    ||||||||||||||||||||  |||| ||||||||||||| | ||||||||||||||||| ||| |||||    
T  21054314 atcgaaccacaccaatacaagaaata-tgatgtgtggagcaaaggagagtggtaaccaccaaactaagtg 21054246  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 9036775 - 9036708
Alignment:
Q  290 gatcgaaccacaccaatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagtg 360  Q
    ||||||||||||||||| ||||| ||   |||||||||||| | ||||||||||||||||| |||||||||    
T  9036775 gatcgaaccacaccaatgcaaaggat---gatgtgtggagctaaggagagtggtaaccaccaaacaaagtg 9036708  T

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Target: scaffold1808 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold1808
Description:

Target: scaffold1808; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 304 - 359
Target Start/End: Complemental strand, 214 - 159
Alignment:
Q  304 aatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagt 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  214 aatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagt 159  T

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Target: scaffold0674 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 359
Target Start/End: Original strand, 3545 - 3600
Alignment:
Q  304 aatacaaagaataatgatgtgtggagcgacggagagtggtaaccacctaacaaagt 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3545 aatacaaagaataatgatgtgtggagcgacggagagtggtaaccaccgaacaaagt 3600  T

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