View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21565_high_1 (Length: 638)
Name: NF21565_high_1
Description: NF21565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21565_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 18686156 - 18686546
Alignment:
| Q |
1 |
aagagaaataagatgccctttgctgattccaaccgtatccgttgaagttgaatagattgttccattattcattttccccactgccaccgcacgtttgcgg |
100 |
Q |
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| T |
18686156 |
aagagaaataagatgccctttgctgattccaaccgtatccgttgaagttgaatagattgttccattattcgttttccccactgccaccgcacgtttgtgg |
18686255 |
T |
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| Q |
101 |
gtgtttcaccgtgaaaatagagaagctactatttgtagctttactgtagacgctcttttactttgttgccaccgccaaaacaaaccctcacgaagtctct |
200 |
Q |
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| T |
18686256 |
gtgtttcaccgtgaaaatagagaagctactatttgtagctttactgtagacgctcttttactttgttgccaccgccaaaacaaacactcacgaagtctct |
18686355 |
T |
|
| Q |
201 |
ctttttggtagtcttacccttagagtgtgtttggtacccttaggttttttgatagttctaccatacccttagtttttgtaggtgcacaaatgtatagata |
300 |
Q |
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| T |
18686356 |
ctttttggtagtcttacccttagagtgtgtttggtacccttaggttttttgatagttctaccatacccttagtttttgtaggtgcacaaatgtatagata |
18686455 |
T |
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| Q |
301 |
cataccaannnnnnnacgggaagatacatgcaattggttatataagcaaatgcttatctaatctgagtaagttagcagttggtgaggtctg |
391 |
Q |
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| T |
18686456 |
cataccaatttttttacgggaagatacatgcaattggttatataagcaaatgcttatataatctgagtaagttagcagttggtgaggtctg |
18686546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 449 - 626
Target Start/End: Original strand, 18686604 - 18686782
Alignment:
| Q |
449 |
cttactgaagtgaggggtggaaggtgtgt-acctctgtgatttgtgttttgttttattctggctcctgcaagggtcatggtttacactcggtgtcttcct |
547 |
Q |
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| T |
18686604 |
cttactgaagtgaggggtggaaggtgtggcacctttgtgatttgtgttttgttttactctggctcctgcaagggtcatggtttacactcggtgtcttcct |
18686703 |
T |
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| Q |
548 |
gcataaaggcatgtatggtgtcttcctgcgtaaaggtatattggtggtaacttgcttggtgttgggttgcatcttattt |
626 |
Q |
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| T |
18686704 |
gcataaaggcatgtatggtgtcttcctgcgtaaaggtatattggtggtaacttgcttggtgttgggttgcatcttattt |
18686782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 27678796 - 27678736
Alignment:
| Q |
79 |
cactgccaccgcacgtttgcgggtgtttcaccgtgaaaatagagaagctactatttgtagctt |
141 |
Q |
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| T |
27678796 |
cactgccgccgcacgtttgag--tgattcacagtgaaaatggagaagctactatttgtagctt |
27678736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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