View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21565_high_10 (Length: 231)

Name: NF21565_high_10
Description: NF21565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21565_high_10
NF21565_high_10
[»] chr7 (10 HSPs)
chr7 (76-231)||(21111338-21111493)
chr7 (76-231)||(21123170-21123325)
chr7 (76-231)||(18658460-18658615)
chr7 (76-231)||(21130298-21130453)
chr7 (76-231)||(21108372-21108524)
chr7 (76-231)||(21098753-21098905)
chr7 (19-81)||(21111583-21111645)
chr7 (19-81)||(21123415-21123477)
chr7 (19-81)||(18658705-18658767)
chr7 (19-81)||(21130543-21130605)
[»] chr4 (2 HSPs)
chr4 (76-231)||(39132283-39132438)
chr4 (19-81)||(39132131-39132193)
[»] chr3 (3 HSPs)
chr3 (81-142)||(26675343-26675404)
chr3 (81-129)||(26690690-26690738)
chr3 (81-129)||(26732001-26732049)


Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 76 - 231
Target Start/End: Original strand, 21111338 - 21111493
Alignment:
Q  76 attggaaatccattcaggggccatatatcctcttgttcctctaatcattgagaattctgaattattattaagattgtttctgcttttcagcttagacaat 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21111338 attggaaatccattcaggggccatatatcctcttgttcctctaatcattgagaattctgaattattattaagattgtttctgcttttcagcttagacaat 21111437  T
Q  176 ccaaaatctgctaacttgggctgaaagttagaatcaagaagtatattttgaggctt 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21111438 ccaaaatctgctaacttgggctgaaagttagaatcaagaagtatattttgaggctt 21111493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 76 - 231
Target Start/End: Original strand, 21123170 - 21123325
Alignment:
Q  76 attggaaatccattcaggggccatatatcctcttgttcctctaatcattgagaattctgaattattattaagattgtttctgcttttcagcttagacaat 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21123170 attggaaatccattcaggggccatatatcctcttgttcctctaatcattgagaattctgaattattattaagattgtttctgcttttcagcttagacaat 21123269  T
Q  176 ccaaaatctgctaacttgggctgaaagttagaatcaagaagtatattttgaggctt 231  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21123270 ccaaaatctgctaacttgggttgaaagttagaatcaagaagtatattttgaggctt 21123325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 76 - 231
Target Start/End: Original strand, 18658460 - 18658615
Alignment:
Q  76 attggaaatccattcaggggccatatatcctcttgttcctctaatcattgagaattctgaattattattaagattgtttctgcttttcagcttagacaat 175  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| |||    
T  18658460 attgaaaatccactcaggggccatatatcctcttgttcctctaatcattgagaattctgaattattattaagactgtttcgggttttcagcttagataat 18658559  T
Q  176 ccaaaatctgctaacttgggctgaaagttagaatcaagaagtatattttgaggctt 231  Q
    ||||||||||||||||| || ||||||||||||||||||||||| |||||||||||    
T  18658560 ccaaaatctgctaacttagggtgaaagttagaatcaagaagtatgttttgaggctt 18658615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 76 - 231
Target Start/End: Original strand, 21130298 - 21130453
Alignment:
Q  76 attggaaatccattcaggggccatatatcctcttgttcctctaatcattgagaattctgaattattattaagattgtttctgcttttcagcttagacaat 175  Q
    |||| ||||||| ||||| ||||||||||||| |||||||||||||||||||||| ||||| ||||||  ||||||||||   |||  ||||||||||||    
T  21130298 attgaaaatccactcaggtgccatatatcctcgtgttcctctaatcattgagaatcctgaactattatcgagattgtttcgattttgtagcttagacaat 21130397  T
Q  176 ccaaaatctgctaacttgggctgaaagttagaatcaagaagtatattttgaggctt 231  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21130398 ccaaaatcggctaacttgggctgaaagttagaatcaagaagtatattttgaggctt 21130453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 76 - 231
Target Start/End: Complemental strand, 21108524 - 21108372
Alignment:
Q  76 attggaaatccattcaggggccatatatcctcttgttcctctaatcattgagaattctgaattattattaagattgtttctgcttttcagcttagacaat 175  Q
    |||| ||||||||||||| |||||||| |||||||||||||||||||||||||    |||   ||||||||| ||||| ||| ||| |||||| ||||||    
T  21108524 attgaaaatccattcaggtgccatataccctcttgttcctctaatcattgagatgcatga---attattaaggttgttcctgttttgcagctttgacaat 21108428  T
Q  176 ccaaaatctgctaacttgggctgaaagttagaatcaagaagtatattttgaggctt 231  Q
    |||||||| |||||||||||||| |||||||||||||||||||| ||||| |||||    
T  21108427 ccaaaatcggctaacttgggctggaagttagaatcaagaagtatgttttgtggctt 21108372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 76 - 231
Target Start/End: Complemental strand, 21098905 - 21098753
Alignment:
Q  76 attggaaatccattcaggggccatatatcctcttgttcctctaatcattgagaattctgaattattattaagattgtttctgcttttcagcttagacaat 175  Q
    |||| |||||||||| ||||||||||| |||||||||||||||||||| || |    |||||| ||    |||||||||||| ||| |||||||||||||    
T  21098905 attgaaaatccattctggggccatataccctcttgttcctctaatcatagatacacttgaattgttg---agattgtttctgttttgcagcttagacaat 21098809  T
Q  176 ccaaaatctgctaacttgggctgaaagttagaatcaagaagtatattttgaggctt 231  Q
    |||||||| ||||||||||| |  |||||||||||||||||||||||||| |||||    
T  21098808 ccaaaatccgctaacttgggttcgaagttagaatcaagaagtatattttgcggctt 21098753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 21111645 - 21111583
Alignment:
Q  19 agtacatggaaaatggatctttagctgaaaatctttcatctaaaactaacacacttgattgga 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21111645 agtacatggaaaatggatctttagctgaaaatctttcatctaaaactaacacacttgattgga 21111583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 21123477 - 21123415
Alignment:
Q  19 agtacatggaaaatggatctttagctgaaaatctttcatctaaaactaacacacttgattgga 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21123477 agtacatggaaaatggatctttagctgaaaatctttcatctaaaactaacacacttgattgga 21123415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 18658767 - 18658705
Alignment:
Q  19 agtacatggaaaatggatctttagctgaaaatctttcatctaaaactaacacacttgattgga 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18658767 agtacatggaaaatggatctttagctgaaaatctttcatctaaaactaacacacttgactgga 18658705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 21130605 - 21130543
Alignment:
Q  19 agtacatggaaaatggatctttagctgaaaatctttcatctaaaactaacacacttgattgga 81  Q
    |||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||    
T  21130605 agtacatggaaaatggttctttagcggaaaatctttcatccaaaaccaacacacttgattgga 21130543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 76 - 231
Target Start/End: Complemental strand, 39132438 - 39132283
Alignment:
Q  76 attggaaatccattcaggggccatatatcctcttgttcctctaatcattgagaattctgaattattattaagattgtttctgcttttcagcttagacaat 175  Q
    |||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||  || ||||||||||||||    
T  39132438 attgaaaacccattcaggagccatatatcctcttgttcctctaatcattgagaattctgaattactattgacattgtttctatttctcagcttagacaat 39132339  T
Q  176 ccaaaatctgctaacttgggctgaaagttagaatcaagaagtatattttgaggctt 231  Q
    ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  39132338 ccaaagtctgctaacttgggttgatagttagaatcaagaagtatattttgaggctt 39132283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 39132131 - 39132193
Alignment:
Q  19 agtacatggaaaatggatctttagctgaaaatctttcatctaaaactaacacacttgattgga 81  Q
    |||||||| | ||||  ||||||||||||||||||||||||||||||||||  ||||||||||    
T  39132131 agtacatgaagaatgactctttagctgaaaatctttcatctaaaactaacatgcttgattgga 39132193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 26675343 - 26675404
Alignment:
Q  81 aaatccattcaggggccatatatcctcttgttcctctaatcattgagaattctgaattatta 142  Q
    ||||||||||||| ||||| || |||||||||||||| ||| |||||||   ||||||||||    
T  26675343 aaatccattcaggtgccatgtaacctcttgttcctctcatccttgagaaacttgaattatta 26675404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 26690738 - 26690690
Alignment:
Q  81 aaatccattcaggggccatatatcctcttgttcctctaatcattgagaa 129  Q
    ||||||||||||| ||||| || |||||||||||||| ||| |||||||    
T  26690738 aaatccattcaggtgccatgtaacctcttgttcctctcatccttgagaa 26690690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 26732049 - 26732001
Alignment:
Q  81 aaatccattcaggggccatatatcctcttgttcctctaatcattgagaa 129  Q
    ||||||||||||| ||||| || |||||||||||||| ||| |||||||    
T  26732049 aaatccattcaggtgccatgtaacctcttgttcctctcatccttgagaa 26732001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University