View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21565_high_4 (Length: 394)
Name: NF21565_high_4
Description: NF21565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21565_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 378
Target Start/End: Original strand, 36406561 - 36406922
Alignment:
| Q |
17 |
tgaataaacttgtatgtacacatgcctaaagcgtagtgacttcatgtaacatgtaacgctcgagcttatgctaattctggcttatagatacttaatgtaa |
116 |
Q |
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| T |
36406561 |
tgaataaacttgtatgtatacaagcctaaagcgtagtgacttaatgtaacatgtaacgctcgagcttatgctaattctggcttatagatacttaatgtaa |
36406660 |
T |
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| Q |
117 |
cctatttcctnnnnnnnnctcctaaatgcaacaaattcaaacttcacataat-gtaaacaattaacattagttaaattttttacaggtcaaacctatttc |
215 |
Q |
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| T |
36406661 |
cctatttcctaaaaaaaactcctaaatgcaacaaattcaaacttcacataattgtaaacaattaacattagttaaattttttacaggtcaaacctatttc |
36406760 |
T |
|
| Q |
216 |
tattctcttaaaaaatatctattacaaatttaggccttcaacattaagcaggacatatcaccaaacttgatgcctctcactaacactaagttgaccattg |
315 |
Q |
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| T |
36406761 |
tattctcttaaaa-atatctattacaaatttaggccttcaacattaagcaggacatatcatcaaacttcatgcctctcactaacactaagttgaccattg |
36406859 |
T |
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| Q |
316 |
tcctatttatagccttgtatacatgttttaaaataattacaagaaatttgaagatgtgcctat |
378 |
Q |
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| T |
36406860 |
tcctacttatagccttgtatacatgttttaaaataattacaagaaatttgaagatgtgcctat |
36406922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 196 - 377
Target Start/End: Original strand, 36428819 - 36429001
Alignment:
| Q |
196 |
ttacaggtcaaacctatttctattctcttaaaaaatatctattacaaa-tttaggccttcaacattaagcag-gacatatcaccaaacttgatgcctctc |
293 |
Q |
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| T |
36428819 |
ttacaggtcaaacctattcctattctcgtaaaaa-tatctatcataaaatttaggccttaaacatctaaaagagacataacatcaaacttgacgcctttc |
36428917 |
T |
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| Q |
294 |
actaacactaagttgaccattgtcctatttatagccttgtatacatgttttaaaataattacaagaaatttgaagatgtgccta |
377 |
Q |
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| T |
36428918 |
accaacactaatttgagtgtaggcctatttatagccttgtatacatgttttaaaataattgcaagaaacttgcagatgtgccta |
36429001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 207 - 378
Target Start/End: Original strand, 36435295 - 36435470
Alignment:
| Q |
207 |
acctatttctattctcttaaaaaatatctattacaaatttaggccttcaacattaagcagga----catatcaccaaact-tgatgcctctcactaacac |
301 |
Q |
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|||| ||||||||||||||||| | |||||||| |||| ||| | |||||| | |||||| ||||||| |||||| ||| || ||||||| |||| |
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| T |
36435295 |
acctctttctattctcttaaaattt-tctattacgaattcaggacctcaacaattagcagggggggcatatcatcaaactctgaggcatctcacttacac |
36435393 |
T |
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| Q |
302 |
taagttgaccattgtcctatttatagccttgtatacatgttttaaaataattacaagaaatttgaagatgtgcctat |
378 |
Q |
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| T |
36435394 |
taaattgaccattgtcctatttaaaaccttgtatacatgtgttaaaataatgacgagaaatttggagatgttcctat |
36435470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 36375884 - 36375948
Alignment:
| Q |
299 |
cactaagttgaccattgtcctatttatagccttgtatacatgttttaaaataattacaagaaatt |
363 |
Q |
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| T |
36375884 |
cactaagttgaccattggcctatttatatctatgtatacatgttttaaaatgaagacaagaaatt |
36375948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 258
Target Start/End: Original strand, 36375794 - 36375856
Alignment:
| Q |
195 |
tttacaggtcaaacctatttctattctcttaaaaaatatctattacaaatttaggccttcaaca |
258 |
Q |
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| T |
36375794 |
tttacaggttaaacctatttctattctc-tcaaaaatatatattaggaatttaggccttcaaca |
36375856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 377
Target Start/End: Original strand, 36418990 - 36419029
Alignment:
| Q |
338 |
atgttttaaaataattacaagaaatttgaagatgtgccta |
377 |
Q |
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| T |
36418990 |
atgttttaaaataattacaagaaatttgcagatgtgccta |
36419029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 36428738 - 36428793
Alignment:
| Q |
147 |
acaaattcaaacttcacataat-gtaaacaattaacattagttaaattttttacag |
201 |
Q |
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| T |
36428738 |
acaaactcaaacgtcacataattgtaaacaattaacattagttcaattttttacag |
36428793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 36418904 - 36418980
Alignment:
| Q |
268 |
acatatcaccaaacttgatgcctctcactaacactaagttgaccattgtcctatttatagccttgtatacatgtttta |
345 |
Q |
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| T |
36418904 |
acataacatcaaacttgatgcctttcactaacactaatttgagtgttggcctatttatagcc-tgtatagatgtttta |
36418980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 198
Target Start/End: Original strand, 36418779 - 36418831
Alignment:
| Q |
147 |
acaaattcaaacttcacataat-gtaaacaattaacattagttaaatttttta |
198 |
Q |
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| T |
36418779 |
acaaactcaaacttcacataattgtaaacaattaacattaattcaatttttta |
36418831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 36428635 - 36428709
Alignment:
| Q |
45 |
aagcgtagtgacttcatgtaacatgtaacgctcgagcttatgctaattctggcttatagatacttaatgtaacct |
119 |
Q |
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| T |
36428635 |
aagcatagtgacttaatgtaacctgtaacttaagggcatatgctaattctggcttatagctactcaatgtaacct |
36428709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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