View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21565_low_10 (Length: 246)
Name: NF21565_low_10
Description: NF21565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21565_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 114 - 234
Target Start/End: Original strand, 18686662 - 18686782
Alignment:
| Q |
114 |
ctggctcctgcaagggtcatggtttacactcggtgtcttcctgcataaaggcatgtatggtgtcttcctgcgtaaaggtatattggtggtaacttgcttg |
213 |
Q |
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| T |
18686662 |
ctggctcctgcaagggtcatggtttacactcggtgtcttcctgcataaaggcatgtatggtgtcttcctgcgtaaaggtatattggtggtaacttgcttg |
18686761 |
T |
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| Q |
214 |
gtgttgggttgcatcttattt |
234 |
Q |
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| T |
18686762 |
gtgttgggttgcatcttattt |
18686782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 18686966 - 18686858
Alignment:
| Q |
9 |
acatcatcaaccataactgaagctaacaagggcccagaaaaaacccaaaagcacaaccagagcagccctaaaaatatggactaacctccaaaacctgaag |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
18686966 |
acatcagcaaccataactgaagctaacaagggcccagaaaaaacccaaaagcacaaccagagcgcccctaaaaatatggactaacctccaaaccctgaag |
18686867 |
T |
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| Q |
109 |
tggaactgg |
117 |
Q |
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| T |
18686866 |
tggaactgg |
18686858 |
T |
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