View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21565_low_3 (Length: 403)
Name: NF21565_low_3
Description: NF21565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21565_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 41 - 376
Target Start/End: Original strand, 11351097 - 11351438
Alignment:
| Q |
41 |
gttatatgataaaa--taaaataaaa-cttcacataaaataatttgggatannnnnnngatatgatgcagtatgatatgaatcaatccttctttcaggaa |
137 |
Q |
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| T |
11351097 |
gttatatgataaaaaataaaataaaaacttcacataaaataatttgggatatttttttgatatgatgcactatgatatgaatcaatccttctttcaggaa |
11351196 |
T |
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| Q |
138 |
gtatatcaatcccttaccttatttagttgttttgttttggtagaaaatcccttccttttaatgggtatagnnnnnnnnng------acattttcatatgg |
231 |
Q |
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| T |
11351197 |
gtatatcaatctcttaccttatttagttgttttgttttggtagaaaatcccttccttttaatgg-tatagttttgtttttttttttacattttcatatgg |
11351295 |
T |
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| Q |
232 |
gatagtatagtttattttgatacgtatagatggaaatattttctttttgatatttcctatgatacattcatgtttacgtattttcttgaattccgtaaac |
331 |
Q |
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| T |
11351296 |
-atagtatagtttattttgatacgtatagatggaaatattt-ctttttgatattgcctatgaatcattcatgtttacgtattttcttgaattccgtaaac |
11351393 |
T |
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| Q |
332 |
aaatattcatgcatcttgaaatattgcataaagaattgtttttat |
376 |
Q |
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| T |
11351394 |
aaatattcatgcatcttgaaataatgcataaaatattgtttttat |
11351438 |
T |
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