View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21565_low_5 (Length: 349)

Name: NF21565_low_5
Description: NF21565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21565_low_5
NF21565_low_5
[»] chr4 (4 HSPs)
chr4 (1-216)||(8803225-8803440)
chr4 (1-216)||(19668116-19668331)
chr4 (211-340)||(19668402-19668531)
chr4 (211-340)||(8803025-8803154)
[»] chr2 (5 HSPs)
chr2 (11-216)||(19700030-19700235)
chr2 (1-200)||(27093402-27093601)
chr2 (4-200)||(13804805-13805001)
chr2 (211-340)||(19700306-19700435)
chr2 (222-294)||(35672152-35672224)
[»] chr1 (2 HSPs)
chr1 (1-86)||(46478811-46478896)
chr1 (126-180)||(46478940-46478994)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 8803440 - 8803225
Alignment:
Q  1 ggcggcacaccagaagtagacatgaactcttgcaagtagcatgctagatgtaacaaaagctttgcaaaatgcctggtgtgacaattaannnnnnncgctg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||       |||||    
T  8803440 ggcggcacaccagaagtagacatgaactcttgcaagtagcatgctagatgtaacaaaagctttgcaaaatgcttggtgtgacaattaatgtttttcgctg 8803341  T
Q  101 cgaaacaattcnnnnnnnnnnnnnnttcacataagaaataggcataagaagcaaattttctcaccttaaaatcatcataaatcataatgagcacatgata 200  Q
    |||||||||||              |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8803340 cgaaacaattcaaaaaaattaaaaattcacataagaaatagacacaagaagcaaattttctcaccttaaaatcatcataaatcataatgagcacatgata 8803241  T
Q  201 tctcatattatctaca 216  Q
    ||||||||||||||||    
T  8803240 tctcatattatctaca 8803225  T

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Target: chr4; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 19668116 - 19668331
Alignment:
Q  1 ggcggcacaccagaagtagacatgaactcttgcaagtagcatgctagatgtaacaaaagctttgcaaaatgcctggtgtgacaattaannnnnnncgctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  19668116 ggcggcacaccagaagtagacatgaactcttgcaagtagcatgctagatgtaacaaaagctttgcaaaatgcctggtgtgacaattaatgtttttcgctg 19668215  T
Q  101 cgaaacaattcnnnnnnnnnnnnnnttcacataagaaataggcataagaagcaaattttctcaccttaaaatcatcataaatcataatgagcacatgata 200  Q
    |||||||||||              |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19668216 cgaaacaattcaaaaaaattaaaaattcacataagaaatagacacaagaagcaaattttctcaccttaaaatcatcataaatcataatgaacacatgata 19668315  T
Q  201 tctcatattatctaca 216  Q
    ||||||||||||||||    
T  19668316 tctcatattatctaca 19668331  T

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Target: chr4; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 211 - 340
Target Start/End: Original strand, 19668402 - 19668531
Alignment:
Q  211 tctacatcctcaaacattttttgcctacatgtagagagcatgaatatcataatcattaacaacaattatactctccacaatcatattggcttctgaaatt 310  Q
    |||||||||| ||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19668402 tctacatcctaaaacaatttttgcctacacgtagaaagcatgaatatcataatcattaacaacaattatactctccacaatcatattggcttctaaaatt 19668501  T
Q  311 ccaatctctctacaaatgtcaaagtctcat 340  Q
    ||||||||||||||||||||||| ||||||    
T  19668502 ccaatctctctacaaatgtcaaattctcat 19668531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 211 - 340
Target Start/End: Complemental strand, 8803154 - 8803025
Alignment:
Q  211 tctacatcctcaaacattttttgcctacatgtagagagcatgaatatcataatcattaacaacaattatactctccacaatcatattggcttctgaaatt 310  Q
    |||||||||| ||||| |||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  8803154 tctacatcctaaaacaatttttgcctacacgtagaaagcatgaatatcataatcattaacaagaattatactctccacaatcatattggcttctaaaatt 8803055  T
Q  311 ccaatctctctacaaatgtcaaagtctcat 340  Q
    ||||||||||||||||||||||| ||||||    
T  8803054 ccaatctctctacaaatgtcaaattctcat 8803025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 19700030 - 19700235
Alignment:
Q  11 cagaagtagacatgaactcttgcaagtagcatgctagatgtaacaaaagctttgcaaaatgcctggtgtgacaattaannnnnnncgctgcgaaacaatt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||    
T  19700030 cagaagtagacatgaactcttgcaagtagcatgctagatgtaacaaaagctttgcaaaatgcctggtgtgacaattaatgttttttgctgcgaaacaatt 19700129  T
Q  111 cnnnnnnnnnnnnnnttcacataagaaataggcataagaagcaaattttctcaccttaaaatcatcataaatcataatgagcacatgatatctcatatta 210  Q
    |              |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19700130 caaaaaaattaaaaattcacataagaaatagacacaagaagcaaattttctcaccttaaaatcatcataaatcataatgagcacgtgatatctcatatta 19700229  T
Q  211 tctaca 216  Q
    ||||||    
T  19700230 tctaca 19700235  T

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Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 27093402 - 27093601
Alignment:
Q  1 ggcggcacaccagaagtagacatgaactcttgcaagtagcatgctagatgtaacaaaagctttgcaaaatgcctggtgtgacaattaannnnnnncgctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       |||||    
T  27093402 ggcggcacaccagaagtagacatgaactcttgcaagtagcatgctagatgtaacaaaagctttgcaaaacgcctggtgtgacaattaatgtttttcgctg 27093501  T
Q  101 cgaaacaattcnnnnnnnnnnnnnnttcacataagaaataggcataagaagcaaattttctcaccttaaaatcatcataaatcataatgagcacatgata 200  Q
    |||||||||||              |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27093502 cgaaacaattcaaaaaaattaaaaattcacataagaaatagacacaagaagcaaattttctcaccttaaaatcatcataaatcataatgagcacatgata 27093601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 4 - 200
Target Start/End: Original strand, 13804805 - 13805001
Alignment:
Q  4 ggcacaccagaagtagacatgaactcttgcaagtagcatgctagatgtaacaaaagctttgcaaaatgcctggtgtgacaattaannnnnnncgctgcga 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       ||||||||    
T  13804805 ggcacaccagaagtagacatgaactcttgcaagtagcatgctagatgtaacaaaagctttgcaaaacgcctggtgtgacaattaatgtttttcgctgcga 13804904  T
Q  104 aacaattcnnnnnnnnnnnnnnttcacataagaaataggcataagaagcaaattttctcaccttaaaatcatcataaatcataatgagcacatgata 200  Q
    ||||||||              |||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13804905 aacaattcaaaaaaatgaaaaattcacataagaaatagacacaagaagcaaattttctcaccttaaaatcatcataaatcgtaatgagcacatgata 13805001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 211 - 340
Target Start/End: Original strand, 19700306 - 19700435
Alignment:
Q  211 tctacatcctcaaacattttttgcctacatgtagagagcatgaatatcataatcattaacaacaattatactctccacaatcatattggcttctgaaatt 310  Q
    |||||||||| ||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19700306 tctacatcctaaaacaatttttgcctacacgtagaaagcatgaatatcataatcattaacaacaattatactctccacaatcatattggcttctaaaatt 19700405  T
Q  311 ccaatctctctacaaatgtcaaagtctcat 340  Q
    ||||||||||||||||||||||| ||||||    
T  19700406 ccaatctctctacaaatgtcaaattctcat 19700435  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 35672152 - 35672224
Alignment:
Q  222 aaacattttttgcctacatgtagagagcatgaatatcataatcattaacaacaattatactctccacaatcat 294  Q
    |||||||| ||||||||||||| | || |||||||||||||||||||||||||| ||||| ||||| ||||||    
T  35672152 aaacatttcttgcctacatgtataaagaatgaatatcataatcattaacaacaactatacgctccataatcat 35672224  T

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Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 46478811 - 46478896
Alignment:
Q  1 ggcggcacaccagaagtagacatgaactcttgcaagtagcatgctagatgtaacaaaagctttgcaaaatgcctggtgtgacaatt 86  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  46478811 ggcggcacaccagaagtagacatggactcctgcaagtagcatgctagatggaacaaaagctttgcaagatgcctggtttgacaatt 46478896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 46478940 - 46478994
Alignment:
Q  126 ttcacataagaaataggcataagaagcaaattttctcaccttaaaatcatcataa 180  Q
    |||||||||||| | | ||  |||||||||||| |||||||||||||||||||||    
T  46478940 ttcacataagaattcgacacgagaagcaaatttactcaccttaaaatcatcataa 46478994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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