View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21565_low_9 (Length: 249)
Name: NF21565_low_9
Description: NF21565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21565_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 50373354 - 50373585
Alignment:
| Q |
1 |
tccaaacgaacagttcagagatataaagtccctatagaatccacaaaaaataaatgactaatttgagctggagcttggaaccactactatatcccaaagc |
100 |
Q |
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| T |
50373354 |
tccaaacgaacagttcagagatataaagtccctatagaatccacaaaaaataaatgactaatttgagctggagcttggaaccactactatatcccaaagc |
50373453 |
T |
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| Q |
101 |
tgcttaagcatgtgcatgtgcatgtgcacaggagttagcttcacaatatgtgcgacatattttcacttcccaatctagctccaacaaacctattcccaac |
200 |
Q |
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| T |
50373454 |
tgcttaa------------gcatgtgcacaggagttagcttcacaatatgtgcgacatattttcacttcccaatctagctccaacaaacctattcccaac |
50373541 |
T |
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| Q |
201 |
accactcact----gtcactggtttacggctacacaggttctgc |
240 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||| |
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| T |
50373542 |
accactcactgtcagtcactggtttacggctacacagggtctgc |
50373585 |
T |
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