View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21566_high_12 (Length: 255)

Name: NF21566_high_12
Description: NF21566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21566_high_12
NF21566_high_12
[»] chr5 (1 HSPs)
chr5 (1-240)||(41345612-41345851)
[»] chr7 (1 HSPs)
chr7 (184-228)||(9483384-9483428)
[»] chr8 (2 HSPs)
chr8 (171-214)||(15140368-15140411)
chr8 (170-222)||(30918778-30918830)
[»] chr4 (1 HSPs)
chr4 (187-229)||(35212745-35212787)
[»] chr3 (1 HSPs)
chr3 (170-228)||(7563199-7563257)
[»] chr2 (2 HSPs)
chr2 (170-236)||(33498620-33498686)
chr2 (168-220)||(9994743-9994795)
[»] chr6 (2 HSPs)
chr6 (182-223)||(6916737-6916778)
chr6 (188-220)||(33501985-33502017)
[»] chr1 (1 HSPs)
chr1 (188-224)||(46873779-46873815)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 41345612 - 41345851
Alignment:
Q  1 tgatcttaatgccaaagacaagagattgaagtcaaagacagttccaggtatatgcttgaaaaagttttgcttggtagttttaattttaaggggtgaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41345612 tgatcttaatgccaaagacaagagattgaagtcaaagacagttccaggtatatgcttgaaaaagttttgcttggtagttttaattttaaggggtgaaatt 41345711  T
Q  101 gaactatatagcatagacactttatattgtaggtgtatttggtgtccaacacgtgtttgtgtttgatacaacaccgactcgtgtggttacattcaattag 200  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  41345712 gaactatatagcatagacactttatattgtaggtgtatttgttatccaacacgtgttagtgtttgatacaacactgactcgtgtggttacattcaattag 41345811  T
Q  201 tcaattttctcaaactattattggtgtcgacttgtctgtg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41345812 tcaattttctcaaactattattggtgtcgacttgtctgtg 41345851  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 9483428 - 9483384
Alignment:
Q  184 tggttacattcaattagtcaattttctcaaactattattggtgtc 228  Q
    |||||||||||||||| || ||||||||||| |||||||||||||    
T  9483428 tggttacattcaattattctattttctcaaattattattggtgtc 9483384  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 15140368 - 15140411
Alignment:
Q  171 acaccgactcgtgtggttacattcaattagtcaattttctcaaa 214  Q
    |||||||| |||||||||||||||||||| |||| |||||||||    
T  15140368 acaccgacacgtgtggttacattcaattattcaaatttctcaaa 15140411  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 30918778 - 30918830
Alignment:
Q  170 aacaccgactcgtgtggttacattcaattagtcaattttctcaaactattatt 222  Q
    ||||||||| | |||||||||||||||||| |||| ||||| ||| |||||||    
T  30918778 aacaccgacacatgtggttacattcaattattcaactttctaaaattattatt 30918830  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 35212745 - 35212787
Alignment:
Q  187 ttacattcaattagtcaattttctcaaactattattggtgtcg 229  Q
    ||||||||||||| | |||||||||||| ||||||||||||||    
T  35212745 ttacattcaattatttaattttctcaaattattattggtgtcg 35212787  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 7563199 - 7563257
Alignment:
Q  170 aacaccgactcgtgtggttacattcaattagtcaattttctcaaactattattggtgtc 228  Q
    ||||||||| ||||| | |||||||||||| || || |||||||| |||||||||||||    
T  7563199 aacaccgacacgtgtagatacattcaattattccatattctcaaattattattggtgtc 7563257  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 33498686 - 33498620
Alignment:
Q  170 aacaccgactcgtgtggttacattcaattagtcaattttctcaaactattattggtgtcgacttgtc 236  Q
    ||||||||| |||  ||||||||||||||| || ||||||||||| ||||| | |||||||| ||||    
T  33498686 aacaccgacacgtcaggttacattcaattattccattttctcaaattattacttgtgtcgacgtgtc 33498620  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 9994795 - 9994743
Alignment:
Q  168 acaacaccgactcgtgtggttacattcaattagtcaattttctcaaactatta 220  Q
    ||||||||||| | |||||| |||||||| || | ||||||||||||||||||    
T  9994795 acaacaccgacgcatgtggtcacattcaactatttaattttctcaaactatta 9994743  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 6916778 - 6916737
Alignment:
Q  182 tgtggttacattcaattagtcaattttctcaaactattattg 223  Q
    |||||||||||||||||| |||||||||||||| | ||||||    
T  6916778 tgtggttacattcaattattcaattttctcaaattgttattg 6916737  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 33501985 - 33502017
Alignment:
Q  188 tacattcaattagtcaattttctcaaactatta 220  Q
    |||||||||||| ||||||||||||||||||||    
T  33501985 tacattcaattattcaattttctcaaactatta 33502017  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 46873815 - 46873779
Alignment:
Q  188 tacattcaattagtcaattttctcaaactattattgg 224  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  46873815 tacattcaattagtccattttatcaaactattattgg 46873779  T

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