View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21566_high_13 (Length: 254)
Name: NF21566_high_13
Description: NF21566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21566_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 26803305 - 26803066
Alignment:
| Q |
2 |
atagttaattgcagaacatacaataatatttttgctctagggaagtactaattttaaatttatgtgcagggctgcattttcagaatttgatgcagaaatt |
101 |
Q |
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| T |
26803305 |
atagttaattgcagaacatacaataatatttttgctctagggaagtactaattttaaatttatgtgcagggctgcattttcagaatttgatgcagaaatt |
26803206 |
T |
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| Q |
102 |
gtggccaatttgactgataagcaaatgatgtctattagttcagaatatggcattgatataagtaaagttagaggagttgttgataatgctaaccaaattt |
201 |
Q |
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| T |
26803205 |
gtggccaatttgactgataagcaaatgatgtctattagttcagaatatggcattgatataagtaaagttagaggagttgttgataatgctaaccaaattt |
26803106 |
T |
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| Q |
202 |
tacaggtaaataaaaatgtgcccttttcatcattcttttc |
241 |
Q |
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| T |
26803105 |
tacaggtaaataaaaatgtgcccttttcatcattcttttc |
26803066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 30 - 194
Target Start/End: Complemental strand, 30343517 - 30343352
Alignment:
| Q |
30 |
tttttgctctagggaagta-ctaattttaaatttatgtgcagggctgcattttcagaatttgatgcagaaattgtggccaatttgactgataagcaaatg |
128 |
Q |
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| T |
30343517 |
tttttgctctagggaagtaactaactttaaatttatgtgcagagatgcattttcagaatttgatgcagaaattgtggccaatttgactgataagcaaatg |
30343418 |
T |
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| Q |
129 |
atgtctattagttcagaatatggcattgatataagtaaagttagaggagttgttgataatgctaac |
194 |
Q |
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| T |
30343417 |
atgtctattagttcagaatatagcattgacataagaaaagttagaggagttgttgataatgctaac |
30343352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 211
Target Start/End: Complemental strand, 18416520 - 18416377
Alignment:
| Q |
68 |
cagggctgcattttcagaatttgatgcagaaattgtggccaatttgactgataagcaaatgatgtctattagttcagaatatggcattgatataagtaaa |
167 |
Q |
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|||| ||||||||||||||||| |||||| || ||||||| || |||||||| |||||| |||||||||||| |||||||| ||||||||||| | | |
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| T |
18416520 |
caggactgcattttcagaatttcatgcagcaacattggccaacttaactgataaacaaatgttgtctattagtttggaatatgggattgatataagcaga |
18416421 |
T |
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| Q |
168 |
gttagaggagttgttgataatgctaaccaaattttacaggtaaa |
211 |
Q |
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| T |
18416420 |
gttcgaggagttgttgataatgctaatcgaattttagaggtaaa |
18416377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 33 - 194
Target Start/End: Original strand, 18986265 - 18986427
Alignment:
| Q |
33 |
ttgctctagggaagta-ctaattttaaatttatgtgcagggctgcattttcagaatttgatgcagaaattgtggccaatttgactgataagcaaatgatg |
131 |
Q |
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|||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18986265 |
ttgctctaggtaagtaactaactttaaatttatgtgcagagctgcattttcagaatttgatgcagaaattgtggccaatttgattgataagcaaatgatg |
18986364 |
T |
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| Q |
132 |
tctattagttcagaatatggcattgatataagtaaagttagaggagttgttgataatgctaac |
194 |
Q |
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| T |
18986365 |
tctattagttcagaatatagcattgacataagaaaagttagaggagttgttgataatgctaac |
18986427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 33 - 194
Target Start/End: Complemental strand, 23919252 - 23919090
Alignment:
| Q |
33 |
ttgctctagggaagta-ctaattttaaatttatgtgcagggctgcattttcagaatttgatgcagaaattgtggccaatttgactgataagcaaatgatg |
131 |
Q |
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|||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23919252 |
ttgctctaggtaagtaactaactttaaatttatgtgcagagctgcattttcagaatttgatgcagaaattgtggccaatttgattgataagcaaatgatg |
23919153 |
T |
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| Q |
132 |
tctattagttcagaatatggcattgatataagtaaagttagaggagttgttgataatgctaac |
194 |
Q |
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|||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
23919152 |
tctattagttcagaatatagcattgacataagaaaagttagaggagttgttgataatgctaac |
23919090 |
T |
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