View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21566_high_3 (Length: 547)
Name: NF21566_high_3
Description: NF21566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21566_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 36025220 - 36025702
Alignment:
| Q |
1 |
agtcgtgactaaggaaaatgagacaagcctacacacatgtcataaaagggtgatttcccagcacgtttttcacacaatgaaacaattgtgtcttcagctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36025220 |
agtcgtgactaaggaaaatgagacaagcctacacacatgtcataaaagggtgatttcccagcacgtttttcacacaatgaaacaattgtgtcttcagctg |
36025319 |
T |
|
| Q |
101 |
ttcctaaatcaccacatggatagtaacaaatccaccaccaatattttgacagaaggttttcctagcctagaattgtttt-----------------tggt |
183 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
36025320 |
ttcctaaagcaccacatggatagtaacaaatccaccaccaatattttgacagaaggttttcctagcctagaattgctttcatctttgttgttttgttggt |
36025419 |
T |
|
| Q |
184 |
ggggattatctacctatgtattgtctacttcttgagtgacattttctttatctctaactttcttaattatctaaataatttattttaaccatcaatttat |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36025420 |
ggggattatctacctatgtattgtctacttcttgagtgacattttctttatctctaactttcttaattatctaaataatttattttaatcatcaatttat |
36025519 |
T |
|
| Q |
284 |
cgacaagtttctcaggtttacttccctatccttccgagtcttcgatcttaggcttctcaagctgcgttacagatgcacatgtcatcnnnnnnngccaagc |
383 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||| |||||||||| ||||||||||||| ||||||| |
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| T |
36025520 |
cgacaagtttctcaggtttacttccctatctttccgggtcttcgatcttcggcttctcaagttgcgttacaggtgcacatgtcatctttttttgccaagc |
36025619 |
T |
|
| Q |
384 |
ttcatgtcattccccgaaggttgcgctaaagagttgaacttccaagttattatttgctacacagatttgctttagtgtgttca |
466 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
36025620 |
ttcatgtcattccccaagggttgcgctaaagagttgaacttccaagttattatttgctgcatagatttgctttagtgtgttca |
36025702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 46116234 - 46116198
Alignment:
| Q |
253 |
tctaaataatttattttaaccatcaatttatcgacaa |
289 |
Q |
| |
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||||||||||||||||||||||||||| |||| |||| |
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| T |
46116234 |
tctaaataatttattttaaccatcaatctatctacaa |
46116198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 46129368 - 46129332
Alignment:
| Q |
253 |
tctaaataatttattttaaccatcaatttatcgacaa |
289 |
Q |
| |
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||||||||||||||||||||||||||| |||| |||| |
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|
| T |
46129368 |
tctaaataatttattttaaccatcaatctatctacaa |
46129332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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