View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21566_high_5 (Length: 479)
Name: NF21566_high_5
Description: NF21566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21566_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 438
Target Start/End: Complemental strand, 21215624 - 21215200
Alignment:
| Q |
13 |
gataatactgattggaggaaataaaatatggttcgaaattaaaactataatttattttg-acatataatttttggaattgcgacatatgttgagcgacta |
111 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
21215624 |
gataatattgattagaggaaataaaatatggttcgaaattaaaactataattttttttttacatataatttttggaattg--acatatgttgagcgacta |
21215527 |
T |
|
| Q |
112 |
atggagtatttatttaaatattcaactattgtgtggtatcactataccgtatcttatatgtcttagtttgacattctatatctttgattgtatagaatgt |
211 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21215526 |
atggagtatttatttaaatattcaattattgtgtggtatcactatatcgtatcttatatgtcttagtttgacattctatatctttgattgtatagaatgt |
21215427 |
T |
|
| Q |
212 |
cttaaatataaacacatttgcatttatacattacaagtatgttgcatcgttgtctcaatctcaagttcgttgctttgtatcttcggtctttcacctatgt |
311 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
21215426 |
cttaaatatagacacatttgcatttatacattacaagtatgttgcatcgttgtctcaatctcaagtccgttgctttgtatcttcggtctttcatctatgt |
21215327 |
T |
|
| Q |
312 |
ttgcatatgaatttacaatcttcaaatgattatcttttggggcataacatatatttaagaccaagaatttacaagaaaataaaacctaaatttcaagtct |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| || |
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| T |
21215326 |
ttgcatatgaatttacaatcttcaaatgattatcttttagggcataacatatatttaagaccaagaatttacaagaaaataaaatctacatttcaagcct |
21215227 |
T |
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| Q |
412 |
aaaattcatatcaatacataggtgaag |
438 |
Q |
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| T |
21215226 |
gaaattcatatcaatacataggtgaag |
21215200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 36542990 - 36542896
Alignment:
| Q |
80 |
tttttggaattgcgacatatgttgagcgactaatggagtatttatttaaatattcaactattgtgtggtatcactataccgtatcttatatgtct |
174 |
Q |
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|||| ||||||| ||||||| ||| | |||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||| |
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| T |
36542990 |
ttttaggaattgtgacatatattgcacaactattggagtatttatttaaatattcaattattgtgtggtatcactataccatatctcatatgtct |
36542896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 36565361 - 36565427
Alignment:
| Q |
108 |
actaatggagtatttatttaaatattcaactattgtgtggtatcactataccgtatcttatatgtct |
174 |
Q |
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|
| T |
36565361 |
actattggagtatttatttaaatattcaattattgtgtggtatcactataccatatctcatatgtct |
36565427 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 264 - 437
Target Start/End: Original strand, 16065529 - 16065697
Alignment:
| Q |
264 |
tctcaatctcaagttcgttgctttgtatcttcggtctttcacctatgtttgcatatgaatttacaatcttcaaatgattatcttttggggcataacatat |
363 |
Q |
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| T |
16065529 |
tctcaatctcaagttcgtttcattgtacctttgatctttcgtc-atgtttgcatatgaaatttcaattttcaaatgatt---ttttttggcatataatat |
16065624 |
T |
|
| Q |
364 |
atttaagaccaagaatttacaagaaaataaaacctaaatttcaagtctaaaattcatatcaatacataggtgaa |
437 |
Q |
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| T |
16065625 |
atttcagatcaagagctgacaa-ataaaaaaacctagatttcaagcctgaaattcatatcaaaacataggtgaa |
16065697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 264 - 334
Target Start/End: Complemental strand, 3175345 - 3175276
Alignment:
| Q |
264 |
tctcaatctcaagttcgttgctttgtatcttcggtctttcacctatgtttgcatatgaatttacaatcttc |
334 |
Q |
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| T |
3175345 |
tctcaatctcaagttcgttgcattgtatctttgatatttcatctatgtttgcatatggattt-caatcttc |
3175276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 378
Target Start/End: Original strand, 24596476 - 24596550
Alignment:
| Q |
308 |
atgtttgcatatgaatttacaatcttcaaat----gattatcttttggggcataacatatatttaagaccaagaa |
378 |
Q |
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| T |
24596476 |
atgtttgcatatgaatttccaagcttcaaatatatggttttcttttggggtataatatatatttaagactaagaa |
24596550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 378
Target Start/End: Complemental strand, 24617638 - 24617564
Alignment:
| Q |
308 |
atgtttgcatatgaatttacaatcttcaaat----gattatcttttggggcataacatatatttaagaccaagaa |
378 |
Q |
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| T |
24617638 |
atgtttgcatatgaatttccaagcttcaaatatatggttttcttttggggtataatatatatttaagactaagaa |
24617564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 372
Target Start/End: Complemental strand, 7371165 - 7371137
Alignment:
| Q |
344 |
tcttttggggcataacatatatttaagac |
372 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
7371165 |
tcttttggggcataacatatatttaagac |
7371137 |
T |
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