View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21566_high_8 (Length: 337)

Name: NF21566_high_8
Description: NF21566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21566_high_8
NF21566_high_8
[»] chr4 (37 HSPs)
chr4 (11-323)||(27565977-27566289)
chr4 (11-323)||(27425614-27425926)
chr4 (75-321)||(27415490-27415733)
chr4 (11-323)||(27570075-27570388)
chr4 (18-323)||(27420213-27420522)
chr4 (11-323)||(27412474-27412778)
chr4 (16-323)||(27563372-27563688)
chr4 (165-323)||(27585644-27585802)
chr4 (193-323)||(27497348-27497478)
chr4 (193-323)||(27527145-27527275)
chr4 (193-287)||(27478945-27479039)
chr4 (193-287)||(27486005-27486099)
chr4 (174-323)||(27513802-27513951)
chr4 (193-287)||(27506682-27506776)
chr4 (174-299)||(27486948-27487073)
chr4 (186-303)||(27498392-27498509)
chr4 (193-303)||(27501301-27501411)
chr4 (174-257)||(27469425-27469508)
chr4 (193-267)||(27526194-27526268)
chr4 (190-303)||(27431194-27431307)
chr4 (186-267)||(27476664-27476745)
chr4 (186-267)||(27500420-27500501)
chr4 (190-303)||(27557470-27557583)
chr4 (195-323)||(27489946-27490074)
chr4 (106-154)||(27526289-27526337)
chr4 (190-289)||(17970280-17970379)
chr4 (190-267)||(27444876-27444953)
chr4 (206-323)||(27524521-27524638)
chr4 (251-323)||(27503964-27504036)
chr4 (106-154)||(27516786-27516834)
chr4 (107-154)||(27473808-27473855)
chr4 (108-154)||(27500515-27500561)
chr4 (190-323)||(27502833-27502966)
chr4 (190-267)||(27505784-27505861)
chr4 (195-323)||(27468353-27468481)
chr4 (251-323)||(27475605-27475677)
chr4 (195-323)||(27514877-27515005)
[»] chr5 (4 HSPs)
chr5 (193-320)||(1756786-1756913)
chr5 (193-323)||(1754672-1754802)
chr5 (106-154)||(1754418-1754466)
chr5 (186-267)||(1754323-1754404)
[»] chr3 (11 HSPs)
chr3 (190-323)||(38043884-38044017)
chr3 (190-285)||(55084767-55084862)
chr3 (190-267)||(38028848-38028925)
chr3 (190-267)||(38040163-38040240)
chr3 (190-323)||(50909941-50910074)
chr3 (193-320)||(38024904-38025031)
chr3 (193-320)||(38031356-38031483)
chr3 (190-323)||(38033805-38033938)
chr3 (175-320)||(50911898-50912043)
chr3 (190-285)||(48840775-48840870)
chr3 (190-285)||(50904856-50904951)
[»] chr2 (1 HSPs)
chr2 (190-289)||(3073550-3073649)
[»] chr8 (2 HSPs)
chr8 (175-265)||(21607380-21607470)
chr8 (190-267)||(21604836-21604913)


Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 27566289 - 27565977
Alignment:
Q  11 cacagatcattcacatcctaaagcattccaatttccaaaaacttgcttcttgcttacaagtcttttttaaaaccaatttttctcaagtttgaacgcatac 110  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27566289 cacaaatcattcacatcctaaaccattccaatttccaaaaacttgcttcttgcttacaagtcttttttaaaaccaatttttctcaagtttgaacgcatac 27566190  T
Q  111 agcaatgggttttcgtttccctagtattatcaaaagggcatcatttgttggaaaccgagcagtttcaaaagttgaggacgtgccaaagggatatcttgca 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27566189 agcaatgggttttcgtttccctagtattatcaaaagggcatcatttgttggaaaccgagcagtttcaaaagttgtggacgtgccaaagggatatcttgca 27566090  T
Q  211 gtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctgatacaagctgaggaagagcatg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  27566089 gtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccattgtttcaagacttgctgatacaagttgaggaagagcatg 27565990  T
Q  311 gatatgatcatcc 323  Q
    |||||||||||||    
T  27565989 gatatgatcatcc 27565977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 11 - 323
Target Start/End: Original strand, 27425614 - 27425926
Alignment:
Q  11 cacagatcattcacatcctaaagcattccaatttccaaaaacttgcttcttgcttacaagtctttt-ttaaaaccaatttttctcaagtttgaacgcata 109  Q
    |||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||| |||||||  | | ||||||||||| ||| ||||    
T  27425614 cacaaatcattcacatcctaaaccattccaatttc-aaaaacttgcttcttgcttacaggtctttttttaaaactgaatattctcaagttttaacacata 27425712  T
Q  110 cagcaatgggttttcgtttccctagtattatcaaaagggcatcatttgttggaaaccgagcagtttcaaaagttgaggacgtgccaaagggatatcttgc 209  Q
    || ||||||||||||||||  || |||| |||| || ||||||||||  || ||||||| ||| ||| |||| || ||||||||||||||||||||||||    
T  27425713 caacaatgggttttcgttttgctggtatcatcagaaaggcatcattttctgcaaaccgatcagcttcgaaagctgtggacgtgccaaagggatatcttgc 27425812  T
Q  210 agtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctgatacaagctgaggaagagcat 309  Q
    ||| ||||||||||||||||||||||| | ||||||||| ||||||||| |||||||||| |  |||||||||||  |||  |||  ||||||||||  |    
T  27425813 agtatatgttggagagaaacaaaagcggtatgtgatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagttt 27425912  T
Q  310 ggatatgatcatcc 323  Q
    ||||||||||||||    
T  27425913 ggatatgatcatcc 27425926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 75 - 321
Target Start/End: Original strand, 27415490 - 27415733
Alignment:
Q  75 ttttaaaaccaatttttctcaagtttgaacgcatacagcaatgggttttcgtttccctagtattatcaaaagggcatcatttgttggaaaccgagcagtt 174  Q
    ||||||||| | || ||||||||||| ||| |||||| |||||||||||||| |||||||||| |||| || | ||||||||  || || ||||| | ||    
T  27415490 ttttaaaacaatttcttctcaagttttaacacatacaacaatgggttttcgtgtccctagtatcatcagaaagtcatcattttctgcaagccgagtaatt 27415589  T
Q  175 tcaaaagttgaggacgtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgt 274  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||| | ||    
T  27415590 tcaaaagttgtggatgtgccaaagggatatcttgcagtgtatgttgga---aaacaaaagcgatttgtgatccccatatcatacttgaaccaaccatcgt 27415686  T
Q  275 ttcaagacttgctgatacaagctgaggaagagcatggatatgatcat 321  Q
    ||||||||||| |||  |||||||||||||||  |||||||||||||    
T  27415687 ttcaagacttgttgagtcaagctgaggaagagtttggatatgatcat 27415733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 27570388 - 27570075
Alignment:
Q  11 cacagatcattcacatcctaaagcattccaatttccaaaaacttgcttcttgcttacaagtctttttt--aaaaccaatttttctcaagtttgaacgcat 108  Q
    |||| ||||||||||||||||||||||| ||| |  ||||||||| || ||||||| |||| ||| ||  ||||||| || ||||||||| | ||| |||    
T  27570388 cacaaatcattcacatcctaaagcattcaaatctg-aaaaacttggttattgcttaaaagtttttatttaaaaaccatttattctcaagtgttaacacat 27570290  T
Q  109 acagcaatgggttttcgtttccctagtattatcaaaagggcatcatttgttggaaaccgagcagtttcaaaagttgaggacgtgccaaagggatatcttg 208  Q
    |||  |||||||||||||  |||| |||| |||| ||||||||| |||  |||||||||| ||| |||||||| || ||| |||||||||||||||||||    
T  27570289 acaaaaatgggttttcgtccccctggtatcatcagaagggcatctttttctggaaaccgatcagcttcaaaagctgtggatgtgccaaagggatatcttg 27570190  T
Q  209 cagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctgatacaagctgaggaagagca 308  Q
    |||| ||||||||||||||||| | ||| | |||||||||| |||||||| | | |||||| |  ||||||||||||||||  |||||||||||||||      
T  27570189 cagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtcaagctgaggaagagtt 27570090  T
Q  309 tggatatgatcatcc 323  Q
     ||||||||||||||    
T  27570089 cggatatgatcatcc 27570075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 27420213 - 27420522
Alignment:
Q  18 cattcacatcctaaagcattccaatttccaaaaacttgcttcttgcttacaagtctttttta-----aaaccaatttttctcaagtttgaacgcatacag 112  Q
    |||||||||||||||||||||  |||| |||||||||| |  ||||||| |||| | |||||     |||||| || |||| |||||| ||| ||||||     
T  27420213 cattcacatcctaaagcattcagattt-caaaaacttggtctttgcttaaaagtttattttatttttaaaccatttcttctaaagttttaacacatacaa 27420311  T
Q  113 caatgggttttcgtttccctagtattatcaaaagggcatcatttgttggaaaccgagcagtttcaaaagttgaggacgtgccaaagggatatcttgcagt 212  Q
    |||||||||||||||||||| |||| |||| || ||||||||||  || ||||||| ||| |||||||  || |||||||||||||||||||||||||||    
T  27420312 caatgggttttcgtttccctggtatcatcagaaaggcatcattttctgcaaaccgatcagcttcaaaatctgtggacgtgccaaagggatatcttgcagt 27420411  T
Q  213 gtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctgatacaagctgaggaagagcatgga 312  Q
     ||||||||||||||||| | ||| | | | |||||| |||||||| ||| |||||| |  ||||||| ||||||||  |||| ||||||||||  ||||    
T  27420412 atatgttggagagaaacagacgcggtatttaatccccgtatcatacttgagccaaccttcatttcaaggcttgctgagtcaagttgaggaagagtttgga 27420511  T
Q  313 tatgatcatcc 323  Q
    |||||||||||    
T  27420512 tatgatcatcc 27420522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 323
Target Start/End: Original strand, 27412474 - 27412778
Alignment:
Q  11 cacagatcattcacatcctaaagcattccaatttccaaaaacttgcttcttgcttacaagtcttttttaaaaccaatttttctcaagtttgaacgcatac 110  Q
    |||| ||||||||||||||||| ||||  |||||| ||||||||||||||||||||||||||||  | | ||||| ||    | |||||  ||| |||||    
T  27412474 cacaaatcattcacatcctaaaccattttaatttc-aaaaacttgcttcttgcttacaagtcttcct-acaaccatttgaatttaagttctaacacatac 27412571  T
Q  111 agcaatgggttttcgtttccctagtattatcaaaagggcatcatttgttggaaaccgagcagtttcaaaagttgaggacgtgccaaagggatatcttgca 210  Q
    |  |||||||||||||||| || |||| |||| |||||||||||||  || |||||||||||||||||||| ||  ||| |||||||||||||| ||||     
T  27412572 aaaaatgggttttcgtttctctggtatcatcagaagggcatcattttctgcaaaccgagcagtttcaaaagctgttgacatgccaaagggatatattgcc 27412671  T
Q  211 gtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctgatacaagctgaggaagagcatg 310  Q
    ||||||||||||||||||      || ||||||||||| ||||||||| |||||||||| || |||||||||||  |||  |||||||| ||||||  ||    
T  27412672 gtgtatgttggagagaaa------cggtttgtgatcccaatatcatacttgaaccaaccattatttcaagacttattgagtcaagctgaagaagagtttg 27412765  T
Q  311 gatatgatcatcc 323  Q
    |||||||||||||    
T  27412766 gatatgatcatcc 27412778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 323
Target Start/End: Complemental strand, 27563688 - 27563372
Alignment:
Q  16 atcattcacatcctaaagcattccaatttccaaaaacttgcttcttgcttacaagt---------cttttttaaaaccaatttttctcaagtttgaacgc 106  Q
    ||||||||||||||||||||||| |||||| ||||||||| || ||||||| ||||         ||||||| |||  |||| ||||||||||| ||| |    
T  27563688 atcattcacatcctaaagcattcaaatttc-aaaaacttggttattgcttaaaagtttttttgttctttttttaaa--aattcttctcaagttttaacac 27563592  T
Q  107 atacagcaatgggttttcgtttccctagtattatcaaaagggcatcat---ttgttggaaaccgagcagtttcaaaagttgaggacgtgccaaagggata 203  Q
    |  ||||||||||||||||||| ||| |||| || | |||| ||||||   ||  |  || |||| ||||| ||||||||| ||||||||||||||| ||    
T  27563591 actcagcaatgggttttcgtttacctggtatcattagaaggtcatcatcgtttacttcaagccgatcagttacaaaagttgtggacgtgccaaagggcta 27563492  T
Q  204 tcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctgatacaagctgaggaa 303  Q
    |||||||||||| |||||||| ||||||||| || ||||||||||| |||||||| |||||||| | ||||||||||| |||||||  ||||| || |||    
T  27563491 tcttgcagtgtacgttggagataaacaaaagagaattgtgatccccgtatcatacttgaaccaaacattgtttcaagatttgctgagtcaagccgaagaa 27563392  T
Q  304 gagcatggatatgatcatcc 323  Q
    |||  |||||||||||||||    
T  27563391 gagtttggatatgatcatcc 27563372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 165 - 323
Target Start/End: Original strand, 27585644 - 27585802
Alignment:
Q  165 ccgagcagtttcaaaagttgaggacgtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaac 264  Q
    |||| ||||||||||||||| ||||||||||||||||||||| |||||||  ||||| || ||||||||| |||||||||||||| |||||||| |||||    
T  27585644 ccgatcagtttcaaaagttgtggacgtgccaaagggatatctcgcagtgtgcgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaac 27585743  T
Q  265 caaccgttgtttcaagacttgctgatacaagctgaggaagagcatggatatgatcatcc 323  Q
    ||||| ||||||||||| ||| |||  ||||| || ||||||  |||||||||||||||    
T  27585744 caaccattgtttcaagatttgatgagtcaagccgaagaagagtttggatatgatcatcc 27585802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 193 - 323
Target Start/End: Complemental strand, 27497478 - 27497348
Alignment:
Q  193 ccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctgatac 292  Q
    |||||||| ||| ||||||||||||||||||| ||||||||||| ||||||||||| || |||||| | |||||||| ||||||||| | ||| |||  |    
T  27497478 ccaaagggctatgttgcagtgtatgttggagataaacaaaagcggtttgtgatccctatctcatacttaaaccaaccattgtttcaatatttgttgagtc 27497379  T
Q  293 aagctgaggaagagcatggatatgatcatcc 323  Q
    ||||||||||||||  |||||||||||||||    
T  27497378 aagctgaggaagagtttggatatgatcatcc 27497348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 193 - 323
Target Start/End: Original strand, 27527145 - 27527275
Alignment:
Q  193 ccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctgatac 292  Q
    |||||||| |||||||| |||||||||||||| ||||| || || ||||||||||| |||||| || | |||||||| | ||||| ||| |||||||  |    
T  27527145 ccaaagggctatcttgcggtgtatgttggagataaacagaaacggtttgtgatcccaatatcacacttaaaccaaccatcgtttctagagttgctgagtc 27527244  T
Q  293 aagctgaggaagagcatggatatgatcatcc 323  Q
    ||||||||||||||  |||||||||||||||    
T  27527245 aagctgaggaagagtttggatatgatcatcc 27527275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 193 - 287
Target Start/End: Complemental strand, 27479039 - 27478945
Alignment:
Q  193 ccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgct 287  Q
    |||||||| ||| ||||||||||||||||||||||||| ||||| |||||  |||| ||||||||| |||||||||| ||||||||||| |||||    
T  27479039 ccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgct 27478945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 193 - 287
Target Start/End: Complemental strand, 27486099 - 27486005
Alignment:
Q  193 ccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgct 287  Q
    |||||||| ||| ||||||||||||||||||||||||| ||||| |||||  |||| ||||||||| |||||||||| ||||||||||| |||||    
T  27486099 ccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgct 27486005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 323
Target Start/End: Complemental strand, 27513951 - 27513802
Alignment:
Q  174 ttcaaaagttgaggacgtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttg 273  Q
    |||||||| ||  ||||||||||| |||||||| ||||||||||| |||||||||   ||||| ||||||||||| ||||||||| |||||||| | | |    
T  27513951 ttcaaaagctgttgacgtgccaaaaggatatctagcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaatatcatacttgaaccaaacctcg 27513852  T
Q  274 tttcaagacttgctgatacaagctgaggaagagcatggatatgatcatcc 323  Q
    || ||||| ||| |||  |||||||| ||| |  ||| ||||||||||||    
T  27513851 ttccaagaattgttgaaccaagctgaagaacaatatgaatatgatcatcc 27513802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 193 - 287
Target Start/End: Original strand, 27506682 - 27506776
Alignment:
Q  193 ccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgct 287  Q
    |||||||| ||| ||||||| ||||| ||||||||||| | ||| ||||||||||| ||||||||| | |||||||| ||||||||||| |||||    
T  27506682 ccaaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgct 27506776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 299
Target Start/End: Original strand, 27486948 - 27487073
Alignment:
Q  174 ttcaaaagttgaggacgtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttg 273  Q
    |||||||| || |||||| |||||||||||||| |||||||| || |||||||||   ||||| |||||||||||  |||||||| | |||||||| | |    
T  27486948 ttcaaaagctgtggacgttccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctttatcatacttaaaccaaccatcg 27487047  T
Q  274 tttcaagacttgctgatacaagctga 299  Q
    |||||||| ||| |||  ||||||||    
T  27487048 tttcaagaattgttgaaccaagctga 27487073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 303
Target Start/End: Original strand, 27498392 - 27498509
Alignment:
Q  186 ggacgtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttg 285  Q
    |||| |||||||||||||||| ||||| |||||||||||| ||   || || ||||||||||| ||||||||| |||||||||| | ||| |||||||||    
T  27498392 ggacatgccaaagggatatctagcagtatatgttggagaggaaatgaaacgttttgtgatccctatatcatacttgaaccaaccatcgttccaagacttg 27498491  T
Q  286 ctgatacaagctgaggaa 303  Q
     |||  ||||| ||||||    
T  27498492 ttgaaccaagccgaggaa 27498509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 303
Target Start/End: Original strand, 27501301 - 27501411
Alignment:
Q  193 ccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctgatac 292  Q
    |||||||||| ||| ||||| |||||||||||| ||   || || ||||||||||| ||||||||| | |||||||| ||||||||||||||| |||  |    
T  27501301 ccaaagggatgtctagcagtatatgttggagaggaaatgaaacggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagacttgttgaacc 27501400  T
Q  293 aagctgaggaa 303  Q
    |||| ||||||    
T  27501401 aagccgaggaa 27501411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 257
Target Start/End: Original strand, 27469425 - 27469508
Alignment:
Q  174 ttcaaaagttgaggacgtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcata 257  Q
    |||||||| || |||||| |||||||||||||| |||||||| || |||||||||   ||||| ||||||||||| ||||||||    
T  27469425 ttcaaaagctgtggacgttccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctatatcata 27469508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 267
Target Start/End: Complemental strand, 27526268 - 27526194
Alignment:
Q  193 ccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaa 267  Q
    |||||||||||||| |||||||||||||||||||||   ||||| |||||||| ||  |||||||| ||||||||    
T  27526268 ccaaagggatatctagcagtgtatgttggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaa 27526194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 303
Target Start/End: Complemental strand, 27431307 - 27431194
Alignment:
Q  190 gtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctga 289  Q
    ||||||||||||||| ||||||| |||||||| ||  ||   ||| | ||||||||||| ||||||||| ||||||||||||  |||||||| ||| |||    
T  27431307 gtgccaaagggatatattgcagtatatgttggggatgaaatgaagaggtttgtgatcccaatatcatacttgaaccaaccgtcatttcaagaattgttga 27431208  T
Q  290 tacaagctgaggaa 303  Q
      ||||| ||||||    
T  27431207 atcaagccgaggaa 27431194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 267
Target Start/End: Original strand, 27476664 - 27476745
Alignment:
Q  186 ggacgtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaa 267  Q
    |||||| |||||||||||||| |||||||||||||| ||||||   ||||| |||||||| ||  |||||||| ||||||||    
T  27476664 ggacgttccaaagggatatctagcagtgtatgttggtgagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaa 27476745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 27500501 - 27500420
Alignment:
Q  186 ggacgtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaa 267  Q
    |||||| ||||| |||||||| |||||||| || |||||||||   ||||||||||||||||| ||||||||| | ||||||    
T  27500501 ggacgtaccaaaaggatatctagcagtgtacgtaggagagaaaatgaagcgatttgtgatccctatatcatacttaaaccaa 27500420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 303
Target Start/End: Original strand, 27557470 - 27557583
Alignment:
Q  190 gtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctga 289  Q
    ||||||| |||||||||||| || |||||||||||| ||   ||| | ||||||||||| || |||||| | |||||||| |  |||||||| |||||||    
T  27557470 gtgccaaggggatatcttgccgtatatgttggagaggaaatgaagaggtttgtgatcccaatgtcatacttaaaccaaccatcatttcaagaattgctga 27557569  T
Q  290 tacaagctgaggaa 303  Q
      ||||||||||||    
T  27557570 atcaagctgaggaa 27557583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 323
Target Start/End: Original strand, 27489946 - 27490074
Alignment:
Q  195 aaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctgatacaa 294  Q
    |||||| ||| ||| |||||||||||||||||||||||| || |||||  ||||  | |||||| | ||| |||| |  |||||||| ||| |||  |||    
T  27489946 aaagggctatgttgtagtgtatgttggagagaaacaaaaacggtttgtagtccctgtgtcatacttaaacaaaccatcatttcaagatttgttgaatcaa 27490045  T
Q  295 gctgaggaagagcatggatatgatcatcc 323  Q
    || |||||||||  |||||||||||||||    
T  27490046 gccgaggaagagtttggatatgatcatcc 27490074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 27526337 - 27526289
Alignment:
Q  106 catacagcaatgggttttcgtttccctagtattatcaaaagggcatcat 154  Q
    |||||| |||||||||||||||| |||||||| ||||||||||||||||    
T  27526337 catacaacaatgggttttcgtttacctagtatcatcaaaagggcatcat 27526289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 289
Target Start/End: Original strand, 17970280 - 17970379
Alignment:
Q  190 gtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctga 289  Q
    |||||||||||||||||||| ||||| ||||||||| ||   ||||| ||||||||||| |  |||||| |||||||| | |  |||||| |||||||||    
T  17970280 gtgccaaagggatatcttgcggtgtacgttggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcatttcaatacttgctga 17970379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 27444953 - 27444876
Alignment:
Q  190 gtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaa 267  Q
    ||||||||||||||||||||||| || ||||||||| ||   ||| | ||||||||||| ||||||||| ||| ||||    
T  27444953 gtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaa 27444876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 323
Target Start/End: Original strand, 27524521 - 27524638
Alignment:
Q  206 ttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctgatacaagctgaggaaga 305  Q
    ||||||||||||||||||||||||  | ||| ||  |  | ||  |||||||  |||||||||| |  |||||||||||| |||  ||||||||||||||    
T  27524521 ttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaaga 27524620  T
Q  306 gcatggatatgatcatcc 323  Q
    |  |||||||||||||||    
T  27524621 gtttggatatgatcatcc 27524638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 323
Target Start/End: Original strand, 27503964 - 27504036
Alignment:
Q  251 tatcatacctgaaccaaccgttgtttcaagacttgctgatacaagctgaggaagagcatggatatgatcatcc 323  Q
    |||||||| |||||||||| |  |||||||||||| |||  ||||| |||||||||  |||||||||||||||    
T  27503964 tatcatacttgaaccaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatcc 27504036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 27516834 - 27516786
Alignment:
Q  106 catacagcaatgggttttcgtttccctagtattatcaaaagggcatcat 154  Q
    |||||| |||||||||||||||| |||||||| ||||||||| ||||||    
T  27516834 catacaacaatgggttttcgtttacctagtatcatcaaaaggtcatcat 27516786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 27473808 - 27473855
Alignment:
Q  107 atacagcaatgggttttcgtttccctagtattatcaaaagggcatcat 154  Q
    ||||| |||||||||||||||| || ||||| ||||||||||||||||    
T  27473808 atacaacaatgggttttcgtttaccaagtatcatcaaaagggcatcat 27473855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 27500561 - 27500515
Alignment:
Q  108 tacagcaatgggttttcgtttccctagtattatcaaaagggcatcat 154  Q
    |||| |||||||||||||||| |||||||| ||||||||| ||||||    
T  27500561 tacaacaatgggttttcgtttacctagtatcatcaaaaggtcatcat 27500515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 323
Target Start/End: Complemental strand, 27502966 - 27502833
Alignment:
Q  190 gtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctga 289  Q
    |||||||| ||||||||||| || ||||| ||||||||    ||||| |||||||| || || |||||  |||| ||| | |  ||||||||||||||||    
T  27502966 gtgccaaaaggatatcttgccgtttatgtaggagagaagatgaagcggtttgtgattccaatgtcatatttgaatcaaacttcatttcaagacttgctga 27502867  T
Q  290 tacaagctgaggaagagcatggatatgatcatcc 323  Q
      ||||||| ||||||   ||||||||| |||||    
T  27502866 gccaagctgtggaagaatttggatatgaccatcc 27502833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 27505861 - 27505784
Alignment:
Q  190 gtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaa 267  Q
    ||||||||||| ||||| |||||||| || |||||||||   ||||| |||||||| ||  |||||||| ||||||||    
T  27505861 gtgccaaaggggtatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaa 27505784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 323
Target Start/End: Complemental strand, 27468481 - 27468353
Alignment:
Q  195 aaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctgatacaa 294  Q
    |||||| ||| |||| |||||||||||||||||||    ||| |||||  ||||  |||||||| | |||||||| |  |||||||||||| |||  |||    
T  27468481 aaagggctatgttgcggtgtatgttggagagaaactggtgcggtttgtagtccctgtatcatacttaaaccaaccttcatttcaagacttgttgagtcaa 27468382  T
Q  295 gctgaggaagagcatggatatgatcatcc 323  Q
     | ||||||||   |||||||||||||||    
T  27468381 tccgaggaagaatttggatatgatcatcc 27468353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 323
Target Start/End: Complemental strand, 27475677 - 27475605
Alignment:
Q  251 tatcatacctgaaccaaccgttgtttcaagacttgctgatacaagctgaggaagagcatggatatgatcatcc 323  Q
    |||||||| |||| ||||| |  |||||||||||| |||  ||||| |||||||||  |||||||||||||||    
T  27475677 tatcatacttgaatcaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatcc 27475605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 323
Target Start/End: Original strand, 27514877 - 27515005
Alignment:
Q  195 aaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctgatacaa 294  Q
    |||||| ||| |||| |||||||||||||||||||    ||| |||||  ||||  |||||||| |||| ||||| |  |||||||||||| |||  |||    
T  27514877 aaagggctatgttgcggtgtatgttggagagaaactggtgcggtttgtagtccctgtatcatacttgaatcaaccttcatttcaagacttgttgagtcaa 27514976  T
Q  295 gctgaggaagagcatggatatgatcatcc 323  Q
     | ||||||||   |||||||||||||||    
T  27514977 tccgaggaagaatttggatatgatcatcc 27515005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 193 - 320
Target Start/End: Complemental strand, 1756913 - 1756786
Alignment:
Q  193 ccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctgatac 292  Q
    |||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||| | ||||||| ||||| |||  |    
T  1756913 ccaaagggctatcttgcagtgaatgttggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgttgagtc 1756814  T
Q  293 aagctgaggaagagcatggatatgatca 320  Q
    ||||||| |||||   ||||||||||||    
T  1756813 aagctgaagaagaatttggatatgatca 1756786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 193 - 323
Target Start/End: Original strand, 1754672 - 1754802
Alignment:
Q  193 ccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctgatac 292  Q
    |||||||| ||| ||||||||||| ||||||||||||| || ||   ||||||||| ||||||||| |||| ||||| | |||||||  |||| |||  |    
T  1754672 ccaaagggctatgttgcagtgtatattggagagaaacagaaacggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtc 1754771  T
Q  293 aagctgaggaagagcatggatatgatcatcc 323  Q
    |||||| |||||||  |||||||||||||||    
T  1754772 aagctgcggaagagtttggatatgatcatcc 1754802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 1754466 - 1754418
Alignment:
Q  106 catacagcaatgggttttcgtttccctagtattatcaaaagggcatcat 154  Q
    |||||| |||||||||||||||| |||||||| ||||||||| ||||||    
T  1754466 catacaacaatgggttttcgtttacctagtatcatcaaaaggacatcat 1754418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 1754404 - 1754323
Alignment:
Q  186 ggacgtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaa 267  Q
    ||||| |||||| |||||||| || || |||||||||||  ||   ||||| |||||||||||| |||||||| ||||||||    
T  1754404 ggacgagccaaaaggatatctagctgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaa 1754323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 323
Target Start/End: Original strand, 38043884 - 38044017
Alignment:
Q  190 gtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctga 289  Q
    ||||||||| | ||||||||||||||  |||||||| ||   ||||| ||||||||||| || |||||| |||| ||| | | |||||||||||||||||    
T  38043884 gtgccaaagagctatcttgcagtgtactttggagaggaaatgaagcggtttgtgatccctatgtcatacttgaatcaaacttcgtttcaagacttgctga 38043983  T
Q  290 tacaagctgaggaagagcatggatatgatcatcc 323  Q
      ||||| ||||||||   |||||||||||||||    
T  38043984 gtcaagcagaggaagaatttggatatgatcatcc 38044017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 285
Target Start/End: Original strand, 55084767 - 55084862
Alignment:
Q  190 gtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttg 285  Q
    |||||||| || | |||||||||||||||||||||||||   ||||| ||||||||||| || || ||| |||||||||| |  ||||||||||||    
T  55084767 gtgccaaaagggtgtcttgcagtgtatgttggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttg 55084862  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 38028925 - 38028848
Alignment:
Q  190 gtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaa 267  Q
    ||||||||||| |||||||||||||| ||||||||| ||   ||||||||||| |||||||  |||||| ||||||||    
T  38028925 gtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaa 38028848  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 38040240 - 38040163
Alignment:
Q  190 gtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaa 267  Q
    ||||||||||| |||||||||||||| ||||||||| ||   ||||||||||| |||||||  |||||| ||||||||    
T  38040240 gtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaa 38040163  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 323
Target Start/End: Original strand, 50909941 - 50910074
Alignment:
Q  190 gtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctga 289  Q
    ||||||||||| |||||||||||||||||||||||| ||     ||| ||||| |||||||| |||||| |||||||| | |  |||||| ||||| |||    
T  50909941 gtgccaaagggttatcttgcagtgtatgttggagagcaaatgctgcggtttgttatccccatgtcatacttgaaccaagcttcatttcaaaacttgttga 50910040  T
Q  290 tacaagctgaggaagagcatggatatgatcatcc 323  Q
      ||||  ||||||||   |||||||||||||||    
T  50910041 atcaagtggaggaagaatttggatatgatcatcc 50910074  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 320
Target Start/End: Complemental strand, 38025031 - 38024904
Alignment:
Q  193 ccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctgatac 292  Q
    |||||||| ||||||||||| |||||||||||| ||   ||||| ||||| |||||||| |||||| |||||||| | |  |||||| ||||  |||  |    
T  38025031 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtc 38024932  T
Q  293 aagctgaggaagagcatggatatgatca 320  Q
    |||| ||||||||   ||||||||||||    
T  38024931 aagcagaggaagaatttggatatgatca 38024904  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 320
Target Start/End: Complemental strand, 38031483 - 38031356
Alignment:
Q  193 ccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctgatac 292  Q
    |||||||| ||||||||||| |||||||||||| ||   ||||| ||||| |||||||| |||||| |||||||| | |  |||||| ||||  |||  |    
T  38031483 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtc 38031384  T
Q  293 aagctgaggaagagcatggatatgatca 320  Q
    |||| ||||||||   ||||||||||||    
T  38031383 aagcagaggaagaatttggatatgatca 38031356  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 323
Target Start/End: Complemental strand, 38033938 - 38033805
Alignment:
Q  190 gtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctga 289  Q
    ||||||||||| ||||||||||||||  |||||||| ||   ||||| ||||| |||||||  |||||| |||||||| | |  |||||| ||||| |||    
T  38033938 gtgccaaagggctatcttgcagtgtacattggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttga 38033839  T
Q  290 tacaagctgaggaagagcatggatatgatcatcc 323  Q
      ||||| ||||||||   ||||||||| |||||    
T  38033838 gtcaagccgaggaagaatttggatatgaccatcc 38033805  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 320
Target Start/End: Complemental strand, 50912043 - 50911898
Alignment:
Q  175 tcaaaagttgaggacgtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgt 274  Q
    |||||||||| | | ||||||||||| |||||||| || ||||||||||| ||    || || |||||||||||||  |||||| |||||||| | |  |    
T  50912043 tcaaaagttgtgaatgtgccaaagggctatcttgcggtatatgttggagacaagatgaaacggtttgtgatccccaagtcatacttgaaccaagcttcat 50911944  T
Q  275 ttcaagacttgctgatacaagctgaggaagagcatggatatgatca 320  Q
    ||||| ||||| |||  ||||| ||||||||   ||||||||||||    
T  50911943 ttcaaaacttgttgagtcaagcagaggaagaatttggatatgatca 50911898  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 285
Target Start/End: Complemental strand, 48840870 - 48840775
Alignment:
Q  190 gtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttg 285  Q
    ||||||||||||||||||||| |||| || |||||| |    ||||||||||| ||||||||  ||||| |||||||| | |  ||||||||||||    
T  48840870 gtgccaaagggatatcttgcattgtacgtcggagaggagatgaagcgatttgtaatccccatgccatacttgaaccaagcctcatttcaagacttg 48840775  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 285
Target Start/End: Complemental strand, 50904951 - 50904856
Alignment:
Q  190 gtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttg 285  Q
    |||||||||||||||||||||||||| ||||||||  ||   ||||| ||||||||||  || || ||| |||||||| | |  ||||||||||||    
T  50904951 gtgccaaagggatatcttgcagtgtacgttggagaagaaatgaagcggtttgtgatccatatgtcctacttgaaccaaacttcatttcaagacttg 50904856  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 289
Target Start/End: Original strand, 3073550 - 3073649
Alignment:
Q  190 gtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccgttgtttcaagacttgctga 289  Q
    |||||||||||||||||||| ||||| ||||||||| ||   ||||| ||||||||||| |  |||||| |||||||| | |  |||||| |||||||||    
T  3073550 gtgccaaagggatatcttgcggtgtacgttggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcatttcaatacttgctga 3073649  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 265
Target Start/End: Complemental strand, 21607470 - 21607380
Alignment:
Q  175 tcaaaagttgaggacgtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaacc 265  Q
    |||||||||| | | || ||||||||||||||||| || |||||||||||| ||   ||||| ||||| |||||||| |||||| ||||||    
T  21607470 tcaaaagttgtgaatgtaccaaagggatatcttgcggtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaacc 21607380  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 21604913 - 21604836
Alignment:
Q  190 gtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaa 267  Q
    ||||||||||| |||||||||||||| || |||||| ||   ||||||||||| |||||||  |||||| ||||||||    
T  21604913 gtgccaaagggctatcttgcagtgtaagtaggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaa 21604836  T

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