View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21566_low_10 (Length: 330)
Name: NF21566_low_10
Description: NF21566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21566_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 44409635 - 44409922
Alignment:
| Q |
18 |
aataatgcatgtgaaggttctatgaccgtagaagcatttgctggtagagacactgttcaagttccatatcaatctaagggtaaaggagggtttgttagag |
117 |
Q |
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| T |
44409635 |
aataatgcatgtgaaggttctatgaccgtagaagcatttgctggtagagacactgttcaagttccatatcaatctaagggtaaaggagggtttgttagag |
44409734 |
T |
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| Q |
118 |
gcaaacttcgttttaaggcatcgacaagacgtactaggattaggttcctaagtacattttacaccatgaagaatgataactctggttctctttgtggacc |
217 |
Q |
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| T |
44409735 |
gcaaacttcgttttaaggcatcgacaagacgtactaggattaggttcctaagtacattttacaccatgaagaatgataactctggttctctttgtggacc |
44409834 |
T |
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| Q |
218 |
tgttattgatgatgtaaaattgcttagtgttcgttatcccaacaaccatacctaagtagtatatatgctgcaaatcaaaatgctaccttcat |
309 |
Q |
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| T |
44409835 |
tgttattgatgatgtaaaattgcttagtgttcgttatcccaacaaccatacctaagtag----tatgctgcaaatcaaaatgctaccttcat |
44409922 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 2287502 - 2287543
Alignment:
| Q |
203 |
ttctctttgtggacctgttattgatgatgtaaaattgcttag |
244 |
Q |
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|||||||||||| ||||||||||||||||| || |||||||| |
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| T |
2287502 |
ttctctttgtggtcctgttattgatgatgtcaagttgcttag |
2287543 |
T |
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