View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21566_low_2 (Length: 567)
Name: NF21566_low_2
Description: NF21566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21566_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 7e-69; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 284 - 550
Target Start/End: Original strand, 27717890 - 27718148
Alignment:
| Q |
284 |
ccaccaactatgttattaattcttaatttcttattacatcttacattcatcccacatnnnnnnnnnnnnnnnnnnnnnntagtttacaagtcaaagaaca |
383 |
Q |
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| T |
27717890 |
ccaccaactatgttattacttcttaatttcttattacatcttacattcatcccacataaaaaaaaaaaaaaaa------tagtttacaagtcaaagaaca |
27717983 |
T |
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| Q |
384 |
tcgctcttattgtatcaatannnnnnnnnnnnnnnnnngacaaaacttattgtatcaatattaactacactaaatctggatatggtaacagtcagctggt |
483 |
Q |
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| T |
27717984 |
tcgctcttattgtatcaatatttttatttatttttt--gacaaaacttattgtatcaatattaactacactaaatctggatatggtaacagtcagctggt |
27718081 |
T |
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| Q |
484 |
agagtgtattataaaaccacatatataaacttaaaacttcaatgcagtattctttccagttttccac |
550 |
Q |
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| T |
27718082 |
agagtgtattataaaaccacatatataaacttaaaacttcaatgcagtattctttccagttttccac |
27718148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 27717572 - 27717706
Alignment:
| Q |
9 |
tagattatactaactttgtaggcaaataataaagaatagaaagtcagcatgacattcagatatcactaaattaaaa-ttccaacaggcaacagcacacgt |
107 |
Q |
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| T |
27717572 |
tagattatactaactttgtaggcaaataataaagaatagaaagtcagcatgacattcagatatcactaaattaaaatttccaacaggcaacagcacacgt |
27717671 |
T |
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| Q |
108 |
caggaggattctagaatgtaacttataatatatat |
142 |
Q |
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| T |
27717672 |
caggaggattctagactgtaacttataatatatat |
27717706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 135 - 256
Target Start/End: Original strand, 27717741 - 27717862
Alignment:
| Q |
135 |
atatatatctattgaaccgctaatctaacccctttcataactgctgtcttgactctagtcttgaccacaaaccatcctctcaaaaccttgaaaggacaac |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27717741 |
atatatatctattgaaccgctaatctaacccctttcataactgctgtcttgactctagtcttgaccacaaaccatcctctcaaaaccttgaaaggacaac |
27717840 |
T |
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| Q |
235 |
cttcactattggtcatatgctt |
256 |
Q |
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| T |
27717841 |
cttcactattggtcatatgctt |
27717862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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