View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21566_low_4 (Length: 484)
Name: NF21566_low_4
Description: NF21566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21566_low_4 |
 | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
| [»] scaffold0068 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 425; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 9 - 469
Target Start/End: Complemental strand, 32096050 - 32095591
Alignment:
| Q |
9 |
acatcatcaagtgggtagagtgtgacattatccttcatccaataattattccacaccggaatattcgtgccatcccctattttgcacttacttcctgcct |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||| |
|
|
| T |
32096050 |
acatcatcaagtgggtagagtgtgacattatccttcatccaataattattccacaccggaatagtcgtgccatcgcctattttccacttacttcctgcct |
32095951 |
T |
|
| Q |
109 |
taagaataaatttagcattgcataaactcttccaaacaaaactcggtttatggcttagacttgattcaagaaaattacaccgaggaaaatattttgcttt |
208 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
32095950 |
taagaataaatt-agcattgcataaactcttccaaacaaaactcggtttatggcttagacttgattcaagaaaattacactgaagaaaatattttgcttt |
32095852 |
T |
|
| Q |
209 |
gtaaattctagcaataagggtgtctggattcgtcataattctccacccttgtttgcctaacatagccaggttaaaagtaccaagacttttgaagctcata |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32095851 |
gtaaattctagcaataagggtgtctggattcgtcataattctccacccttgtttgcctaacatagccaggttaaaagtaccaagacttttgaagctcata |
32095752 |
T |
|
| Q |
309 |
cctccatcgtttttatgcattgataatttatcccaagaaatccaatgtataccgctcctacttgagcccgaatgaccccaccaaaaggagttaatcattt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32095751 |
cctccatcgtttttatgcattgataatttatcccaagacatccaatgtataccgctcctacttgagcccgaatgaccccaccaaaaggagttaatcattt |
32095652 |
T |
|
| Q |
409 |
tttcaatttcatcacacagagatgagggaagagtgaataaactcatgaaataggttggtat |
469 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32095651 |
tttcaatttcatcacacagagacgagggaagagtgaataaactcatgaaataggttggtat |
32095591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 173 - 394
Target Start/End: Complemental strand, 24176464 - 24176243
Alignment:
| Q |
173 |
ttcaagaaaattacaccgaggaaaatattttgctttgtaaattctagcaataagggtgtctggattcgtcataattctccacccttgtttgcctaacata |
272 |
Q |
| |
|
||||||||||||||| || ||||||||| ||||| || |||| ||| || || |||||||| || |||| ||||||||| |||||||| || ||||| |
|
|
| T |
24176464 |
ttcaagaaaattacaacgcggaaaatatcgagctttatatattcgagcgatgagtgtgtctggttttgtcaaaattctccagccttgttttcccaacatt |
24176365 |
T |
|
| Q |
273 |
gccaggttaaaagtaccaagacttttgaagctcatacctccatcgtttttatgcattgataatttatcccaagaaatccaatgtataccgctcctacttg |
372 |
Q |
| |
|
|||| ||| || || || | |||||| |||||||| |||||||| || || ||||| ||||||||||||||||| ||||| |||||||| ||||| || |
|
|
| T |
24176364 |
gccatgttgaaggtgcccaaacttttaaagctcatccctccatctttcttgtgcatagataatttatcccaagacatccagtgtatacctttcctatgtg |
24176265 |
T |
|
| Q |
373 |
agcccgaatgaccccaccaaaa |
394 |
Q |
| |
|
| || || |||||||||||||| |
|
|
| T |
24176264 |
atcctgagtgaccccaccaaaa |
24176243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 240 - 348
Target Start/End: Original strand, 32751531 - 32751639
Alignment:
| Q |
240 |
gtcataattctccacccttgtttgcctaacatagccaggttaaaagtaccaagacttttgaagctcatacctccatcgtttttatgcattgataatttat |
339 |
Q |
| |
|
||||||| |||||| |||||||| ||||||||||| || ||||| ||| ||| ||||||| |||||||||| ||| || |||||||||| | ||||| |
|
|
| T |
32751531 |
gtcataagtctccaaccttgttttcctaacatagctagattaaaggtaagtagatttttgaaactcatacctcgatcattcttatgcattggcagtttat |
32751630 |
T |
|
| Q |
340 |
cccaagaaa |
348 |
Q |
| |
|
||||||||| |
|
|
| T |
32751631 |
cccaagaaa |
32751639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 454
Target Start/End: Original strand, 19111693 - 19111954
Alignment:
| Q |
192 |
ggaaaatattttgctttgtaaattctagcaataagggtgtctggattcgtcataattctccacccttgtttgcctaacatagccaggttaaaagtaccaa |
291 |
Q |
| |
|
||||||||| |||||||||| ||| |||| | ||| || | ||||| ||||||||||||||||| || || || | |||||| || || ||||| || | |
|
|
| T |
19111693 |
ggaaaatatcttgctttgtacattatagctaaaagagtttaaggattggtcataattctccacccctgcttaccaagcatagcaagatt-aaagtcccta |
19111791 |
T |
|
| Q |
292 |
gacttttgaagctcatacctccatcgtttttatgcattgataatttatcccaagaaatccaatgtataccgctcctacttgag--cccgaatgaccccac |
389 |
Q |
| |
|
||| ||||| | ||| |||||||| ||||| ||||| ||||| | ||||| ||||||||||| ||||| | | ||||| || ||||||||||| |
|
|
| T |
19111792 |
aactcttgaatcccatgcctccatcttttttgtgcatagataacctgtcccatgaaatccaatggatacctttatt--ttgagctcctgaatgaccccag |
19111889 |
T |
|
| Q |
390 |
caaaaggagttaatcattttttcaatttcatcacacagagatgagggaagagtgaataaactcat |
454 |
Q |
| |
|
|| || || || ||||| |||||||| |||||||| ||||| || || | |||||||| |||||| |
|
|
| T |
19111890 |
cagaatgaattcatcatcttttcaatctcatcacaaagagacgacggtaaagtgaatagactcat |
19111954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 421
Target Start/End: Complemental strand, 21697338 - 21697297
Alignment:
| Q |
380 |
atgaccccaccaaaaggagttaatcattttttcaatttcatc |
421 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
21697338 |
atgaccccaccaaaaggtattcatcattttttcaatttcatc |
21697297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 4e-76; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 33 - 453
Target Start/End: Original strand, 23265530 - 23265950
Alignment:
| Q |
33 |
acattatccttcatccaataattattccacaccggaatattcgtgccatcccctattttgcacttacttcctgccttaagaataaatttagcattgcata |
132 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||| ||| || |||| || ||||| ||| |||| || || || ||||| ||||||| ||||||| |
|
|
| T |
23265530 |
acattatccttcatccaataattattctagaccgggatagatgtaccattaccaattttccacctactaccggctttgagaatgaatttagagttgcata |
23265629 |
T |
|
| Q |
133 |
aactcttccaaacaaaactcggtttatggcttagacttgattcaagaaaattacaccgaggaaaatattttgctttgtaaattctagcaataagggtgtc |
232 |
Q |
| |
|
|||| ||||||||||||| || ||||| | || | ||| ||| |||||||||||||| |||| ||| |||||||||||||| |||||||||| || || |
|
|
| T |
23265630 |
tactcctccaaacaaaacttggcttatgccctatagttgcttccagaaaattacaccgcagaaagtatcttgctttgtaaattttagcaataagagtatc |
23265729 |
T |
|
| Q |
233 |
tggattcgtcataattctccacccttgtttgcctaacatagccaggttaaaagtaccaagacttttgaagctcatacctccatcgtttttatgcattgat |
332 |
Q |
| |
|
||||| |||| ||| ||||||||||| || |||||||| |||| ||||| || |||||||||||| ||||||||||||||| |||||||||||| | |
|
|
| T |
23265730 |
aggatttgtcaaaatcctccacccttgcttacctaacattcccagattaaatgtttcaagacttttgaggctcatacctccatcatttttatgcattact |
23265829 |
T |
|
| Q |
333 |
aatttatcccaagaaatccaatgtataccgctcctacttgagcccgaatgaccccaccaaaaggagttaatcattttttcaatttcatcacacagagatg |
432 |
Q |
| |
|
|||||||||||||| ||||| ||||| || | | | |||| || ||||||||||||||||| || || ||||| ||||||||||||||||||| ||||| |
|
|
| T |
23265830 |
aatttatcccaagacatccagtgtattcctcgcttgtttgaaccagaatgaccccaccaaaaagaattcatcatcttttcaatttcatcacacaaagatg |
23265929 |
T |
|
| Q |
433 |
agggaagagtgaataaactca |
453 |
Q |
| |
|
| | ||||||||||||||||| |
|
|
| T |
23265930 |
acgaaagagtgaataaactca |
23265950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 36 - 315
Target Start/End: Original strand, 33907843 - 33908122
Alignment:
| Q |
36 |
ttatccttcatccaataattattccacaccggaatattcgtgccatcccctattttgcacttacttcctgccttaagaataaatttagcattgcataaac |
135 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||| || |||| || ||||| ||| | || || || || ||||| ||||||| ||||||| || |
|
|
| T |
33907843 |
ttatccttcatccaataattattccagaccgggatagatgtaccattaccaattttccacctgctgccggctttgagaatgaatttagagttgcatatac |
33907942 |
T |
|
| Q |
136 |
tcttccaaacaaaactcggtttatggcttagacttgattcaagaaaattacaccgaggaaaatattttgctttgtaaattctagcaataagggtgtctgg |
235 |
Q |
| |
|
|| ||||||||||||| || ||||| | || | ||| ||| |||||||||||||| | ||| ||| |||||||||||||| |||||||||| || || || |
|
|
| T |
33907943 |
tcctccaaacaaaacttggcttatgccctatagttgcttccagaaaattacaccgcgaaaagtatcttgctttgtaaattttagcaataagagtatcagg |
33908042 |
T |
|
| Q |
236 |
attcgtcataattctccacccttgtttgcctaacatagccaggttaaaagtaccaagacttttgaagctcatacctccat |
315 |
Q |
| |
|
||| |||| ||| ||||| ||||| || |||||||| ||||| |||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
33908043 |
atttgtcaaaatcctccatccttgcttacctaacattgccagattaaaagttccaagacttttgaagctcatacttccat |
33908122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 422
Target Start/End: Complemental strand, 23906898 - 23906856
Alignment:
| Q |
380 |
atgaccccaccaaaaggagttaatcattttttcaatttcatca |
422 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
23906898 |
atgaccccaccaaaaggagttgatcatcttttcaatttcatca |
23906856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 5212217 - 5212281
Alignment:
| Q |
192 |
ggaaaatattttgctttgtaaattctagcaataagggtgtctggattcgtcataattctccaccc |
256 |
Q |
| |
|
||||||||| |||||||||| |||||||| ||||| || | ||||| ||||||||||||||||| |
|
|
| T |
5212217 |
ggaaaatatcttgctttgtacattctagctataagcgtttgaggattggtcataattctccaccc |
5212281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 421
Target Start/End: Complemental strand, 4166843 - 4166802
Alignment:
| Q |
380 |
atgaccccaccaaaaggagttaatcattttttcaatttcatc |
421 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
4166843 |
atgaccccaccaaaaggtattcatcattttttcaatttcatc |
4166802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 173 - 473
Target Start/End: Complemental strand, 21503767 - 21503467
Alignment:
| Q |
173 |
ttcaagaaaattacaccgaggaaaatattttgctttgtaaattctagcaataagggtgtctggattcgtcataattctccacccttgtttgcctaacata |
272 |
Q |
| |
|
||||||||||||||| || ||||||||| ||||| || |||| ||| || | |||||| | || |||| ||||||||| |||||||| || ||||| |
|
|
| T |
21503767 |
ttcaagaaaattacaacgcggaaaatatcgagctttatatattcgagctatgactgtgtctagttttgtcaaaattctccagccttgttttcccaacatt |
21503668 |
T |
|
| Q |
273 |
gccaggttaaaagtaccaagacttttgaagctcatacctccatcgtttttatgcattgataatttatcccaagaaatccaatgtataccgctcctacttg |
372 |
Q |
| |
|
|||| ||| || || || | | |||| |||||||| |||||||| || |||||||| ||||||||||||||||| ||||| |||||||| ||||| || |
|
|
| T |
21503667 |
gccatgttgaaggtgcccaaaattttaaagctcatccctccatctttcttatgcatagataatttatcccaagacatccagtgtatacccttcctatgtg |
21503568 |
T |
|
| Q |
373 |
agcccgaatgaccccaccaaaaggagttaatcattttttcaatttcatcacacagagatgagggaagagtgaataaactcatgaaataggttggtattga |
472 |
Q |
| |
|
| || || |||||||||||||| || || |||||||| |||||||||||||||| || || |||||||| |||| ||||| ||||| ||||| ||||| |
|
|
| T |
21503567 |
atcctgagtgaccccaccaaaaagaattcatcattttctcaatttcatcacacaacgaggaaggaagagtaaataggctcataaaatatgttgggattga |
21503468 |
T |
|
| Q |
473 |
t |
473 |
Q |
| |
|
| |
|
|
| T |
21503467 |
t |
21503467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 235 - 463
Target Start/End: Complemental strand, 15026270 - 15026042
Alignment:
| Q |
235 |
gattcgtcataattctccacccttgtttgcctaacatagccaggttaaaagtaccaagacttttgaagctcatacctccatcgtttttatgcattgataa |
334 |
Q |
| |
|
|||| ||||||| |||||| || ||||| ||||||||| | || ||||| ||| ||| ||||||| |||||||||||||| || || ||||| || | |
|
|
| T |
15026270 |
gatttgtcataagtctccagccctgttttcctaacataactagattaaaggtaggtagaattttgaaactcatacctccatcattcttgtgcatagacac |
15026171 |
T |
|
| Q |
335 |
tttatcccaagaaatccaatgtataccgctcctacttgagc--ccgaatgaccccaccaaaaggagttaatcattttttcaatttcatcacacagagatg |
432 |
Q |
| |
|
|||||||||||||| ||| | ||||| || || |||| | |||||||||||||||||||||| || |||||| |||||||| ||||||| ||||| |
|
|
| T |
15026170 |
tttatcccaagaaagccagttaatacctctact--ttgacctcccgaatgaccccaccaaaaggaattcatcattctttcaattccatcacaaagagaga |
15026073 |
T |
|
| Q |
433 |
agggaagagtgaataaactcatgaaataggt |
463 |
Q |
| |
|
| |||||||| |||||||| |||||||| |
|
|
| T |
15026072 |
caaggagagtgaacaaactcataaaataggt |
15026042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 454
Target Start/End: Complemental strand, 5633779 - 5633517
Alignment:
| Q |
192 |
ggaaaatattttgctttgtaaattctagcaataagggtgtctggattcgtcataattctccacccttgtttgcctaacatagccaggttaaaagtaccaa |
291 |
Q |
| |
|
||||||||| |||||||||| |||||||| ||||| || | ||||| ||||||||||||||||| || || || | |||||| || |||||||| || | |
|
|
| T |
5633779 |
ggaaaatatcttgctttgtacattctagctataagcgtttgaggattggtcataattctccacccctgcttaccaagcatagcaagattaaaagtcccta |
5633680 |
T |
|
| Q |
292 |
gacttttgaagctcatacctccatcgtttttatgcattgataatttatcccaagaaatccaatgtataccgctcctacttgag--cccgaatgaccccac |
389 |
Q |
| |
|
||| ||||| | ||| |||||||| ||||| ||||| ||||| | ||||| || |||||||| ||||| | | ||||| || ||||||||||| |
|
|
| T |
5633679 |
aactcttgaatcccatgcctccatcttttttgtgcatagataacctgtcccatgacatccaatggatacctttatt--ttgagctccttaatgaccccac |
5633582 |
T |
|
| Q |
390 |
caaaaggagttaatcattttttcaatttcatcacacagagatgagggaagagtgaataaactcat |
454 |
Q |
| |
|
|| || || || ||||| |||||||| ||||| || |||||||| || | |||||||| |||||| |
|
|
| T |
5633581 |
cagaatgaattcatcatcttttcaatctcatcgcaaagagatgacggtaaagtgaatagactcat |
5633517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 463
Target Start/End: Complemental strand, 22908738 - 22908522
Alignment:
| Q |
248 |
tctccacccttgtttgcctaacatagccaggttaaaagtaccaagacttttgaagctcatacctccatcgtttttatgcattgataatttatcccaagaa |
347 |
Q |
| |
|
|||||| |||||||| |||||||||| || ||||| ||| || |||| || |||||||||||||| || || ||||| |||| ||||||||||||| |
|
|
| T |
22908738 |
tctccaaccttgtttttctaacatagctagattaaaggtaggttgattttttaaactcatacctccatcattcttgtgcatagatagtttatcccaagaa |
22908639 |
T |
|
| Q |
348 |
atccaatgtataccgctcctacttgagc--ccgaatgaccccaccaaaa-ggagttaatcattttttcaatttcatcacacagagatgagggaagagtga |
444 |
Q |
| |
|
| ||| | ||||| || || |||| | ||||||||||||||||||| ||| || |||||| |||||||||||||||| ||||| || ||||||| |
|
|
| T |
22908638 |
agccagttaatacctctact--ttgacctcccgaatgaccccaccaaaaaggaattcatcattctttcaatttcatcacaaagagagacagggagagtga |
22908541 |
T |
|
| Q |
445 |
ataaactcatgaaataggt |
463 |
Q |
| |
|
| |||||||| |||||||| |
|
|
| T |
22908540 |
acaaactcataaaataggt |
22908522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 460
Target Start/End: Complemental strand, 7808157 - 7807980
Alignment:
| Q |
284 |
agtaccaagacttttgaagctcatacctccatcgtttttatgcattgataatttatcccaagaaatccaatgtataccgctcctacttgagcccgaatga |
383 |
Q |
| |
|
|||||| ||||||||||||||||| || | || || || ||||| |||||||||||||| | ||||||||||||| | | ||| | ||||| |
|
|
| T |
7808157 |
agtacctagacttttgaagctcattccactgtctttcttgtgcatatataatttatcccaaaacatccaatgtatacatatattttgtgattcagaatgt |
7808058 |
T |
|
| Q |
384 |
ccccaccaaaaggagttaatcat-tttttcaatttcatcacacagagatgagggaagagtgaataaactcatgaaata |
460 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||||||||||||| | ||| |||||| ||||||||||||||| ||||| |
|
|
| T |
7808057 |
ccccaccagaaggagttcatcatctttttcaatttcatcacataaagactagggaatagtgaataaactcataaaata |
7807980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 192 - 345
Target Start/End: Complemental strand, 18806227 - 18806074
Alignment:
| Q |
192 |
ggaaaatattttgctttgtaaattctagcaataagggtgtctggattcgtcataattctccacccttgtttgcctaacatagccaggttaaaagtaccaa |
291 |
Q |
| |
|
||||||||| || ||||||| |||||||| ||||| || ||||| ||||||||||||||||| || || || | |||| | || |||||||| || | |
|
|
| T |
18806227 |
ggaaaatatcttactttgtacattctagctataagcgtcagaggattggtcataattctccacccctgcttaccaagcataacaagattaaaagtcccta |
18806128 |
T |
|
| Q |
292 |
gacttttgaagctcatacctccatcgtttttatgcattgataatttatcccaag |
345 |
Q |
| |
|
|| ||||| | ||| ||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
18806127 |
agctcttgaatcccatgcctccattttttttgtgcatagataatttatcccaag |
18806074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 346
Target Start/End: Original strand, 29130988 - 29131093
Alignment:
| Q |
241 |
tcataattctccacccttgtttgcctaacatagccaggttaaaagtaccaagacttttgaagctcatacctccatcgtttttatgcattgataatttatc |
340 |
Q |
| |
|
|||||| |||||| || ||||| ||||||||||| || ||||| ||| ||| ||||||| |||||||||||||| | || ||||| || |||||||| |
|
|
| T |
29130988 |
tcataagtctccaaccctgtttccctaacatagctagattaaaggtaggtagatttttgaaactcatacctccatcactattgtgcatagacaatttatc |
29131087 |
T |
|
| Q |
341 |
ccaaga |
346 |
Q |
| |
|
|||||| |
|
|
| T |
29131088 |
ccaaga |
29131093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 469
Target Start/End: Original strand, 19064825 - 19064914
Alignment:
| Q |
381 |
tgaccccaccaaaaggagttaatca--ttttttcaatttcatcacacagagatgagggaagagtgaataaactcatgaaataggttggtat |
469 |
Q |
| |
|
|||||||||||||| ||||| |||| ||||||||||||||||||||| ||||| |||||||| || | ||||| ||||| |||||||| |
|
|
| T |
19064825 |
tgaccccaccaaaatgagttcatcattttttttcaatttcatcacacaaggatga-ggaagagtaaacatgctcataaaataagttggtat |
19064914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 348
Target Start/End: Complemental strand, 13593681 - 13593567
Alignment:
| Q |
234 |
ggattcgtcataattctccacccttgtttgcctaacatagccaggttaaaagtaccaagacttttgaagctcatacctccatcgtttttatgcattgata |
333 |
Q |
| |
|
||||| ||||||| ||| || || ||||| ||||||||||| || ||||| ||| ||| ||||||| |||||||||||||| || || ||| | || | |
|
|
| T |
13593681 |
ggatttgtcataagtcttcaaccctgttttcctaacatagctagattaaaggtaggtagatttttgaaactcatacctccatcattcttgtgcgtagaca |
13593582 |
T |
|
| Q |
334 |
atttatcccaagaaa |
348 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
13593581 |
gtttatcccaagaaa |
13593567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 173 - 473
Target Start/End: Complemental strand, 13502074 - 13501774
Alignment:
| Q |
173 |
ttcaagaaaattacaccgaggaaaatattttgctttgtaaattctagcaataagggtgtctggattcgtcataattctccacccttgtttgcctaacata |
272 |
Q |
| |
|
||||||||||||||| || ||||||||| ||||| || |||| ||| || || |||||||| || |||| ||||||||| |||||||| || ||||| |
|
|
| T |
13502074 |
ttcaagaaaattacaacgcggaaaatatcgagctttatatattcgagcgatgagtgtgtctggttttgtcaaaattctccagccttgttttcccaacatt |
13501975 |
T |
|
| Q |
273 |
gccaggttaaaagtaccaagacttttgaagctcatacctccatcgtttttatgcattgataatttatcccaagaaatccaatgtataccgctcctacttg |
372 |
Q |
| |
|
|||| ||| || || || | |||||| |||||||| |||||||| || || ||||| ||||||||||||||||| |||| |||||||| ||||| || |
|
|
| T |
13501974 |
gccatgttgaaggtgcccaaacttttaaagctcatccctccatctttcttgtgcatagataatttatcccaagacatccggtgtatacctttcctatgtg |
13501875 |
T |
|
| Q |
373 |
agcccgaatgaccccaccaaaaggagttaatcattttttcaatttcatcacacagagatgagggaagagtgaataaactcatgaaataggttggtattga |
472 |
Q |
| |
|
| || || |||||||||||||| || || |||||||| |||||||||||||||| || || || ||||| |||| ||||| ||||| ||||| ||||| |
|
|
| T |
13501874 |
atcctgagtgaccccaccaaaaagaattcatcattttctcaatttcatcacacaatgacgaagggagagtaaataggctcataaaatatgttgggattga |
13501775 |
T |
|
| Q |
473 |
t |
473 |
Q |
| |
|
| |
|
|
| T |
13501774 |
t |
13501774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 313
Target Start/End: Original strand, 27502830 - 27503032
Alignment:
| Q |
111 |
agaataaatttagcattgcataaactcttccaaacaaaactcggtttatggcttagacttgattcaagaaaattacaccgaggaaaatattttgctttgt |
210 |
Q |
| |
|
||||| ||||||| || |||| |||| || |||||||||| |||||| | | | ||||| ||| ||||||||||||| || |||||| ||| ||| | |
|
|
| T |
27502830 |
agaatgaatttagagttacatatactcctctaaacaaaacttggtttacgccctgtacttgcttctagaaaattacaccacgggaaatatcttgttttat |
27502929 |
T |
|
| Q |
211 |
aaattctagcaataagggtgtctggattcgtcataattctccacccttgtttgcctaacatagccaggttaaaagtaccaagacttttgaagctcatacc |
310 |
Q |
| |
|
||||| | |||||||| || || ||||| |||| ||| | ||||||||| | |||||||| ||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
27502930 |
aaatttttgcaataagagtatcaggatttgtcaaaatccgccacccttgctaacctaacattgccagattaaaggttccaagacttttgaagctcatacc |
27503029 |
T |
|
| Q |
311 |
tcc |
313 |
Q |
| |
|
||| |
|
|
| T |
27503030 |
tcc |
27503032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 140 - 346
Target Start/End: Complemental strand, 8086636 - 8086429
Alignment:
| Q |
140 |
ccaaacaaaactcggtttatggcttagacttgattcaagaaaattacaccgaggaaaatattttgctttgtaaattctagcaataagggtgtct-ggatt |
238 |
Q |
| |
|
|||||||||||| || ||||||| || | |||| ||||||||||| || | | |||||| || ||||| ||||||||| ||||| |||||| ||||| |
|
|
| T |
8086636 |
ccaaacaaaactaggattatggcctaaaattgagtcaagaaaattgcatctcgaaaaatacttggctttataaattctatagataagcgtgtctcggatt |
8086537 |
T |
|
| Q |
239 |
cgtcataattctccacccttgtttgcctaacatagccaggttaaaagtaccaagacttttgaagctcatacctccatcgtttttatgcattgataattta |
338 |
Q |
| |
|
|||||||||||||| ||||| || || |||||||| |||||||| || |||||||| || | |||||| | ||| ||||| ||||| || | |||| |
|
|
| T |
8086536 |
agtcataattctccagccttgcttccccaacatagcagtattaaaagttcctagacttttaaaacccataccgctatcttttttgtgcatggaaagttta |
8086437 |
T |
|
| Q |
339 |
tcccaaga |
346 |
Q |
| |
|
|||||||| |
|
|
| T |
8086436 |
tcccaaga |
8086429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 466
Target Start/End: Original strand, 27503083 - 27503171
Alignment:
| Q |
378 |
gaatgaccccaccaaaaggagttaatcattttttcaatttcatcacacagagatgagggaagagtgaataaactcatgaaataggttgg |
466 |
Q |
| |
|
|||| |||||||||||| || || ||||| ||||||||||||||||| | ||| || | || |||||||||||||| ||||||||||| |
|
|
| T |
27503083 |
gaataaccccaccaaaaagaattcatcatcttttcaatttcatcacataaagacgacgtgagtgtgaataaactcataaaataggttgg |
27503171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 438
Target Start/End: Original strand, 6751844 - 6751898
Alignment:
| Q |
384 |
ccccaccaaaaggagttaatcattttttcaatttcatcacacagagatgagggaa |
438 |
Q |
| |
|
||||||||||| || || ||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
6751844 |
ccccaccaaaaagaattcatcattttttcgatttcatcaccaagagatgagggaa |
6751898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 109 - 466
Target Start/End: Original strand, 53373 - 53730
Alignment:
| Q |
109 |
taagaataaatttagcattgcataaactcttccaaacaaaactcggtttatggcttagacttgattcaagaaaattacaccgaggaaaatattttgcttt |
208 |
Q |
| |
|
||||||||||||||| ||||| | |||| |||| |||||||| |||||||| | | ||| ||||| |||||||| || ||| ||||| |||| || |
|
|
| T |
53373 |
taagaataaatttagatttgcaaatactcctccacacaaaacttggtttatgtaccaaagttgcttcaaagaaattacaacgcggataatatcttgcctt |
53472 |
T |
|
| Q |
209 |
gtaaattctagcaataagggtgtctggattcgtcataattctccacccttgtttgcctaacatagccaggttaaaagtaccaagacttttgaagctcata |
308 |
Q |
| |
|
||||| ||||||||||||| || ||||| |||||||||||||| ||||| || || | ||| || || || || || || | | |||| |||| |||| |
|
|
| T |
53473 |
ataaatcctagcaataagggattcaggattggtcataattctccaaccttgctttccgagcattgcaagattgaaggttcctaaatttttaaagcccata |
53572 |
T |
|
| Q |
309 |
cctccatcgtttttatgcattgataatttatcccaagaaatccaatgtataccgctcctacttgagcccgaatgaccccaccaaaaggagttaatcattt |
408 |
Q |
| |
|
|||| ||| ||||||||||| || |||| |||||| |||| ||||||||| || ||||| ||| || || ||||||||||| || || || | ||||| |
|
|
| T |
53573 |
cctcaatcttttttatgcatagacaattcatcccatgaaaaccaatgtattcctttcctatttgcacctgagtgaccccaccagaaagaattcaacattt |
53672 |
T |
|
| Q |
409 |
tttcaatttcatcacacagagatgagggaagagtgaataaactcatgaaataggttgg |
466 |
Q |
| |
|
|||||||||||||||| || | ||||| | |||||| |||||||||||||||||||| |
|
|
| T |
53673 |
tttcaatttcatcacatagggtggagggtaaagtgaacaaactcatgaaataggttgg |
53730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 173 - 473
Target Start/End: Original strand, 204489 - 204789
Alignment:
| Q |
173 |
ttcaagaaaattacaccgaggaaaatattttgctttgtaaattctagcaataagggtgtctggattcgtcataattctccacccttgtttgcctaacata |
272 |
Q |
| |
|
||||||||||||||| || ||||||||| ||||| || |||| ||| || || |||||||| || |||| ||||||||| |||||||| || ||||| |
|
|
| T |
204489 |
ttcaagaaaattacaacgcggaaaatatcgagctttatatattcgagctatgagtgtgtctggttttgtcaaaattctccagccttgttttcccaacatt |
204588 |
T |
|
| Q |
273 |
gccaggttaaaagtaccaagacttttgaagctcatacctccatcgtttttatgcattgataatttatcccaagaaatccaatgtataccgctcctacttg |
372 |
Q |
| |
|
|||| || || || || | |||||| |||||||| |||||||| || || ||||| ||||||||||||||||| ||||| |||||||| ||||| || |
|
|
| T |
204589 |
gccattttgaaggtgcccaaacttttaaagctcatccctccatctttcttgtgcatagataatttatcccaagacatccagtgtatacctttcctatgtg |
204688 |
T |
|
| Q |
373 |
agcccgaatgaccccaccaaaaggagttaatcattttttcaatttcatcacacagagatgagggaagagtgaataaactcatgaaataggttggtattga |
472 |
Q |
| |
|
| || | |||||||||||||| || || |||||||| |||||||||||||||| || || || ||||| |||| ||||| ||||| ||||| ||||| |
|
|
| T |
204689 |
atcctaagtgaccccaccaaaaagaattcatcattttctcaatttcatcacacaacgacgaaggcagagtaaataggctcataaaatatgttgggattga |
204788 |
T |
|
| Q |
473 |
t |
473 |
Q |
| |
|
| |
|
|
| T |
204789 |
t |
204789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 173 - 473
Target Start/End: Original strand, 13524453 - 13524753
Alignment:
| Q |
173 |
ttcaagaaaattacaccgaggaaaatattttgctttgtaaattctagcaataagggtgtctggattcgtcataattctccacccttgtttgcctaacata |
272 |
Q |
| |
|
||||||||||||||| || ||||||||| ||||| || |||| ||| || || |||||||| || |||| ||||||||| |||||||| || ||||| |
|
|
| T |
13524453 |
ttcaagaaaattacaacgcggaaaatatcgagctttatatattcgagctatgagtgtgtctggttttgtcaaaattctccagccttgttttcccaacatt |
13524552 |
T |
|
| Q |
273 |
gccaggttaaaagtaccaagacttttgaagctcatacctccatcgtttttatgcattgataatttatcccaagaaatccaatgtataccgctcctacttg |
372 |
Q |
| |
|
|||| ||| || || | | |||||| |||||||| |||| ||| || |||||||| ||||||||||||||||| ||| | |||||||| | ||| || |
|
|
| T |
13524553 |
gccatgttgaaggtgcgcaaacttttaaagctcatccctctatctttcttatgcatagataatttatcccaagacatcaagtgtataccttttctatgtg |
13524652 |
T |
|
| Q |
373 |
agcccgaatgaccccaccaaaaggagttaatcattttttcaatttcatcacacagagatgagggaagagtgaataaactcatgaaataggttggtattga |
472 |
Q |
| |
|
| || || ||||||||| |||| || || |||||||| |||||||||||||||| || || | |||||| |||| ||||| ||||| ||||| ||||| |
|
|
| T |
13524653 |
atcctgagtgaccccacaaaaaagaattcatcattttctcaatttcatcacacaacgacgaagaaagagtaaataggctcataaaatatgttgggattga |
13524752 |
T |
|
| Q |
473 |
t |
473 |
Q |
| |
|
| |
|
|
| T |
13524753 |
t |
13524753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 173 - 473
Target Start/End: Original strand, 13613988 - 13614288
Alignment:
| Q |
173 |
ttcaagaaaattacaccgaggaaaatattttgctttgtaaattctagcaataagggtgtctggattcgtcataattctccacccttgtttgcctaacata |
272 |
Q |
| |
|
||||||||||||||| || ||||||||| ||||| || |||| ||| || || |||||||| || |||| ||||||||| |||||||| || ||||| |
|
|
| T |
13613988 |
ttcaagaaaattacaacgcggaaaatatcgagctttatatattcgagctatgagtgtgtctggttttgtcaaaattctccagccttgttttcccaacatt |
13614087 |
T |
|
| Q |
273 |
gccaggttaaaagtaccaagacttttgaagctcatacctccatcgtttttatgcattgataatttatcccaagaaatccaatgtataccgctcctacttg |
372 |
Q |
| |
|
|||| ||| || || | | |||||| |||||||| |||| ||| || |||||||| ||||||||||||||||| ||| | |||||||| | ||| || |
|
|
| T |
13614088 |
gccatgttgaaggtgcgcaaacttttaaagctcatccctctatctttcttatgcatagataatttatcccaagacatcaagtgtataccttttctatgtg |
13614187 |
T |
|
| Q |
373 |
agcccgaatgaccccaccaaaaggagttaatcattttttcaatttcatcacacagagatgagggaagagtgaataaactcatgaaataggttggtattga |
472 |
Q |
| |
|
| || || ||||||||| |||| || || |||||||| |||||||||||||||| || || | |||||| |||| ||||| ||||| ||||| ||||| |
|
|
| T |
13614188 |
atcctgagtgaccccacaaaaaagaattcatcattttctcaatttcatcacacaacgacgaagaaagagtaaataggctcataaaatatgttgggattga |
13614287 |
T |
|
| Q |
473 |
t |
473 |
Q |
| |
|
| |
|
|
| T |
13614288 |
t |
13614288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 192 - 454
Target Start/End: Original strand, 26382676 - 26382938
Alignment:
| Q |
192 |
ggaaaatattttgctttgtaaattctagcaataagggtgtctggattcgtcataattctccacccttgtttgcctaacatagccaggttaaaagtaccaa |
291 |
Q |
| |
|
||||||||| |||||||||| |||||||| ||||| || | ||||| ||||||||||||||||| || || || | |||||| || |||||||| || | |
|
|
| T |
26382676 |
ggaaaatatcttgctttgtacattctagctataagcgtttgaggattggtcataattctccacccctgcttaccaagcatagcaagattaaaagtcccta |
26382775 |
T |
|
| Q |
292 |
gacttttgaagctcatacctccatcgtttttatgcattgataatttatcccaagaaatccaatgtataccgctcctacttgag--cccgaatgaccccac |
389 |
Q |
| |
|
||| ||||| | ||| |||||||| ||||| ||||| ||||| || ||||| || |||||||| ||||| | | ||||| || || ||||||||| |
|
|
| T |
26382776 |
aactcttgaatcccatgcctccatcttttttgtgcatagataacttgtcccatgacatccaatggatacctttatt--ttgagctcctgattgaccccac |
26382873 |
T |
|
| Q |
390 |
caaaaggagttaatcattttttcaatttcatcacacagagatgagggaagagtgaataaactcat |
454 |
Q |
| |
|
|| || || || ||||| |||||||| |||||||| |||||||| || | |||||||| |||||| |
|
|
| T |
26382874 |
cagaatgaattcatcatcttttcaatctcatcacaaagagatgacggtaaagtgaatagactcat |
26382938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 204 - 473
Target Start/End: Original strand, 6701 - 6970
Alignment:
| Q |
204 |
gctttgtaaattctagcaataagggtgtctggattcgtcataattctccacccttgtttgcctaacatagccaggttaaaagtaccaagacttttgaagc |
303 |
Q |
| |
|
||||| |||||||||||||| || || || || | |||| ||||||||| |||||||| || | ||| || | ||||| || |||||| |||| |||| |
|
|
| T |
6701 |
gctttataaattctagcaattagagtatccggttgtgtcaaaattctccaaccttgttttcccagcattgctaaattaaacgttccaagatttttaaagc |
6800 |
T |
|
| Q |
304 |
tcatacctccatcgtttttatgcattgataatttatcccaagaaatccaatgtataccgctcctacttgagcccgaatgaccccaccaaaaggagttaat |
403 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||| || || | |||| || || |||| ||| ||||| ||||| || |
|
|
| T |
6801 |
tcatacctccatcttttttatgcatagataatttgtcccaagacatccaatgtattcctttcttgtttgatcctgagtgacgccaacaaaaagagttcat |
6900 |
T |
|
| Q |
404 |
cattttttcaatttcatcacacagagatgagggaagagtgaataaactcatgaaataggttggtattgat |
473 |
Q |
| |
|
||| || ||||| |||||||||| | || || ||||| ||||| ||||| ||||| ||||| |||||| |
|
|
| T |
6901 |
catcttctcaatctcatcacacaacaacgaaggtagagtaaataagctcataaaatacgttggaattgat |
6970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 204 - 473
Target Start/End: Complemental strand, 21707209 - 21706940
Alignment:
| Q |
204 |
gctttgtaaattctagcaataagggtgtctggattcgtcataattctccacccttgtttgcctaacatagccaggttaaaagtaccaagacttttgaagc |
303 |
Q |
| |
|
||||| |||||||||||||| || || || || | |||| ||||||||| |||||||| || | ||| || | ||||| || |||||| |||| |||| |
|
|
| T |
21707209 |
gctttataaattctagcaattagagtatccggttgtgtcaaaattctccaaccttgttttcccagcattgctaaattaaacgttccaagatttttaaagc |
21707110 |
T |
|
| Q |
304 |
tcatacctccatcgtttttatgcattgataatttatcccaagaaatccaatgtataccgctcctacttgagcccgaatgaccccaccaaaaggagttaat |
403 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||| || || | |||| || || |||| ||| ||||| ||||| || |
|
|
| T |
21707109 |
tcatacctccatcttttttatgcatagataatttgtcccaagacatccaatgtattcctttcttgtttgatcctgagtgacgccaacaaaaagagttcat |
21707010 |
T |
|
| Q |
404 |
cattttttcaatttcatcacacagagatgagggaagagtgaataaactcatgaaataggttggtattgat |
473 |
Q |
| |
|
||| || ||||| |||||||||| | || || ||||| ||||| ||||| ||||| ||||| |||||| |
|
|
| T |
21707009 |
catcttctcaatctcatcacacaacaacgaaggtagagtaaataagctcataaaatacgttggaattgat |
21706940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 432
Target Start/End: Original strand, 4852892 - 4852946
Alignment:
| Q |
378 |
gaatgaccccaccaaaaggagttaatcattttttcaatttcatcacacagagatg |
432 |
Q |
| |
|
|||| |||| ||||||||||||| ||||||||||||||||||||| ||| ||||| |
|
|
| T |
4852892 |
gaataaccctaccaaaaggagttcatcattttttcaatttcatcatacatagatg |
4852946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 204 - 473
Target Start/End: Original strand, 46389233 - 46389502
Alignment:
| Q |
204 |
gctttgtaaattctagcaataagggtgtctggattcgtcataattctccacccttgtttgcctaacatagccaggttaaaagtaccaagacttttgaagc |
303 |
Q |
| |
|
||||| |||||||||||||| || || || || | |||| ||||||||| |||||||| || | ||| || | ||||| || |||||| |||| |||| |
|
|
| T |
46389233 |
gctttataaattctagcaattagagtatccggttgtgtcaaaattctccaaccttgttttcccagcattgctaaattaaacgttccaagatttttaaagc |
46389332 |
T |
|
| Q |
304 |
tcatacctccatcgtttttatgcattgataatttatcccaagaaatccaatgtataccgctcctacttgagcccgaatgaccccaccaaaaggagttaat |
403 |
Q |
| |
|
||||||||||||| |||||| | || |||||||| |||||||| ||||||||||| || || | |||| || | |||||||||||||| ||||| || |
|
|
| T |
46389333 |
tcatacctccatcttttttaagaatagataatttgtcccaagacatccaatgtattcctttcttgtttgatcctaagtgaccccaccaaaaagagttcat |
46389432 |
T |
|
| Q |
404 |
cattttttcaatttcatcacacagagatgagggaagagtgaataaactcatgaaataggttggtattgat |
473 |
Q |
| |
|
||| || ||||| |||||||||| || || || ||||| ||||| ||||| ||||| ||||| |||||| |
|
|
| T |
46389433 |
catcttctcaatctcatcacacaacgacgaaggtagagtaaataagctcataaaatacgttggaattgat |
46389502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 240 - 473
Target Start/End: Complemental strand, 48212187 - 48211954
Alignment:
| Q |
240 |
gtcataattctccacccttgtttgcctaacatagccaggttaaaagtaccaagacttttgaagctcatacctccatcgtttttatgcattgataatttat |
339 |
Q |
| |
|
|||| ||||||||| |||||||| || | ||| || | |||||||| |||||| |||| ||| |||||||||||| ||||||||||| |||||||| | |
|
|
| T |
48212187 |
gtcaaaattctccaaccttgttttcccagcattgctaaattaaaagttccaagatttttaaaggacatacctccatcttttttatgcatagataatttgt |
48212088 |
T |
|
| Q |
340 |
cccaagaaatccaatgtataccgctcctacttgagcccgaatgaccccaccaaaaggagttaatcattttttcaatttcatcacacagagatgagggaag |
439 |
Q |
| |
|
||||||| ||||||||||| || || | |||| || || |||||||||||||| ||||| ||||| || ||||| |||||||||| || | || || |
|
|
| T |
48212087 |
cccaagacatccaatgtattcctttcttgtttgatcctgagtgaccccaccaaaaagagttcatcatcttctcaatctcatcacacaacgacaaaggtag |
48211988 |
T |
|
| Q |
440 |
agtgaataaactcatgaaataggttggtattgat |
473 |
Q |
| |
|
||| ||||| ||||| ||||| ||||| |||||| |
|
|
| T |
48211987 |
agtaaataagctcataaaatacgttggaattgat |
48211954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 140 - 466
Target Start/End: Original strand, 17779164 - 17779488
Alignment:
| Q |
140 |
ccaaacaaaactcggtttatggcttagacttgattcaagaaaattacaccgaggaaaatattttgctttgtaaattctagcaataagggtgtctggattc |
239 |
Q |
| |
|
|||||||||||| || |||||||||| | |||| ||||||||||| || | |||||||| || ||||| || || |||| || || ||||| ||||| |
|
|
| T |
17779164 |
ccaaacaaaactaggattatggcttaaagttgagtcaagaaaattgcatcttggaaaatacttggctttatacatcctagagatgagcgtgtccggatta |
17779263 |
T |
|
| Q |
240 |
gtcataattctccacccttgtttgcctaacatagccaggttaaaagtaccaagacttttgaagctcatacctccatcgtttttatgcattgataatttat |
339 |
Q |
| |
|
|||||||||||||| ||||| || | |||||||| |||||||| || |||||||| || | |||||| | ||| ||||| ||||| || | ||| | |
|
|
| T |
17779264 |
gtcataattctccaaccttgcttcctcaacatagcagtattaaaagttcctagacttttaaaacccataccgctatcttttttgtgcatggaaagtttgt |
17779363 |
T |
|
| Q |
340 |
cccaagaaatccaatgtataccgctcctacttgagcccgaatgaccccaccaaaaggagttaatcattttttcaatttcatcacacagagatgagggaag |
439 |
Q |
| |
|
||||||| | ||||| || || | || ||| || || |||||||||||||| || || | ||||||||||||||||||||||| ||| || || || |
|
|
| T |
17779364 |
cccaagatagccaattaattcctgttct--gtgaccctgagtgaccccaccaaaaagaatttaacattttttcaatttcatcacacaaagacgatggtag |
17779461 |
T |
|
| Q |
440 |
agtgaataaactcatgaaataggttgg |
466 |
Q |
| |
|
||| || | ||||||||| |||||||| |
|
|
| T |
17779462 |
agtaaacagactcatgaagtaggttgg |
17779488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 466
Target Start/End: Complemental strand, 45420231 - 45420058
Alignment:
| Q |
293 |
acttttgaagctcatacctccatcgtttttatgcattgataatttatcccaagaaatccaatgtataccgctcctacttgagcccgaatgaccccaccaa |
392 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||| || | ||||||| | | | ||| || || || | || ||| || |||||||||||||| |
|
|
| T |
45420231 |
acttttaaagctcatacctccatcctttttatgcatagacagtttatcctatggcaaccagtgaattccttttttatgtgatcctgaatgaccccaccag |
45420132 |
T |
|
| Q |
393 |
aaggagttaatcattttttcaatttcatcacacagagatgagggaagagtgaataaactcatgaaataggttgg |
466 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||| ||||| || || || ||||| || ||||| ||||| ||||| |
|
|
| T |
45420131 |
aaagagttcatcattttttcaatttcatcacaaagagaagaaggtagcgtgaacaagctcataaaataagttgg |
45420058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 235 - 463
Target Start/End: Original strand, 48027469 - 48027696
Alignment:
| Q |
235 |
gattcgtcataattctccacccttgtttgcctaacatagccaggttaaaagtaccaagacttttgaagctcatacctccatcgtttttatgcattgataa |
334 |
Q |
| |
|
|||| ||||||| |||||| | ||||| ||||||||||| || ||||| || ||| ||||||| |||||||||||||| || || ||||| || || |
|
|
| T |
48027469 |
gatttgtcataagtctccagtcctgttttcctaacatagctagattaaaggttggtagatttttgaaactcatacctccatcattcttgtgcatagacaa |
48027568 |
T |
|
| Q |
335 |
tttatcccaagaaatccaatgtataccgctcctacttga--gcccgaatgaccccaccaaaaggagttaatcattttttcaatttcatcacacagagatg |
432 |
Q |
| |
|
|||||||||||||| ||| | || ||| || || |||| |||||||| |||||||||||||| || || ||| |||||||||||||||| ||||| |
|
|
| T |
48027569 |
tttatcccaagaaagccagt-taaacctctact--ttgacctcccgaatggccccaccaaaaggaattcataattctttcaatttcatcacaaagagaga |
48027665 |
T |
|
| Q |
433 |
agggaagagtgaataaactcatgaaataggt |
463 |
Q |
| |
|
||| ||||||| |||||||| || ||||| |
|
|
| T |
48027666 |
caggatgagtgaacaaactcataaagtaggt |
48027696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 192 - 454
Target Start/End: Original strand, 53709513 - 53709775
Alignment:
| Q |
192 |
ggaaaatattttgctttgtaaattctagcaataagggtgtctggattcgtcataattctccacccttgtttgcctaacatagccaggttaaaagtaccaa |
291 |
Q |
| |
|
||||||||| |||||||||| ||| |||| ||||| || | || || ||||||||||||||||| | || || | |||||| || |||||||| || | |
|
|
| T |
53709513 |
ggaaaatatcttgctttgtacattttagctataagcgtttgagggttggtcataattctccacccctacttaccaagcatagcaagattaaaagtcccta |
53709612 |
T |
|
| Q |
292 |
gacttttgaagctcatacctccatcgtttttatgcattgataatttatcccaagaaatccaatgtataccgctcctacttgagccc--gaatgaccccac |
389 |
Q |
| |
|
||| ||||| | ||| |||||||| ||||| ||||| ||||| | ||||| || |||||||| ||||| | | |||||| | |||||||||||| |
|
|
| T |
53709613 |
aactcttgaatcccatgcctccatcttttttgtgcatagataacctgtcccatgacatccaatggatacctttatt--ttgagctcttgaatgaccccac |
53709710 |
T |
|
| Q |
390 |
caaaaggagttaatcattttttcaatttcatcacacagagatgagggaagagtgaataaactcat |
454 |
Q |
| |
|
|| || || || ||||| || ||||| |||||||| |||||||| || | |||||||| |||||| |
|
|
| T |
53709711 |
cagaatgaattcatcatcttgtcaatctcatcacaaagagatgacggtaaagtgaatagactcat |
53709775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 192 - 454
Target Start/End: Complemental strand, 33348706 - 33348444
Alignment:
| Q |
192 |
ggaaaatattttgctttgtaaattctagcaataagggtgtctggattcgtcataattctccacccttgtttgcctaacatagccaggttaaaagtaccaa |
291 |
Q |
| |
|
||||||||| |||||||||| |||||||| ||||| || | || || ||||||||||||||||| || || || | |||||| || |||||||| || | |
|
|
| T |
33348706 |
ggaaaatatcttgctttgtacattctagctataagcgtttgagggttggtcataattctccacccctgcttaccaagcatagcaagattaaaagtcccta |
33348607 |
T |
|
| Q |
292 |
gacttttgaagctcatacctccatcgtttttatgcattgataatttatcccaagaaatccaatgtataccgctcctacttgag--cccgaatgaccccac |
389 |
Q |
| |
|
||| ||||| | ||| |||||||| ||||| ||||| ||||| || ||||| || |||||||| ||||| | | ||||| || || ||||||||| |
|
|
| T |
33348606 |
aactcttgaatcccatgcctccatcttttttgtgcatagataacttgtcccatgacatccaatggatacctttatt--ttgagctcctgattgaccccac |
33348509 |
T |
|
| Q |
390 |
caaaaggagttaatcattttttcaatttcatcacacagagatgagggaagagtgaataaactcat |
454 |
Q |
| |
|
|| || || || ||||| |||||||| |||||||| |||||||| || | |||||||| |||||| |
|
|
| T |
33348508 |
cagaatgaattcatcatcttttcaatctcatcacaaagagatgacggtaaagtgaatagactcat |
33348444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 354
Target Start/End: Original strand, 24449770 - 24449823
Alignment:
| Q |
301 |
agctcatacctccatcgtttttatgcattgataatttatcccaagaaatccaat |
354 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
24449770 |
agctcattcctccatcatttttatgcatggataatttatcccaagaaagccaat |
24449823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 426
Target Start/End: Complemental strand, 15886567 - 15886519
Alignment:
| Q |
378 |
gaatgaccccaccaaaaggagttaatcattttttcaatttcatcacaca |
426 |
Q |
| |
|
||||||||||||||||| | ||| ||||| ||||| ||||||||||||| |
|
|
| T |
15886567 |
gaatgaccccaccaaaacgtgtttatcatcttttctatttcatcacaca |
15886519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 420
Target Start/End: Original strand, 16137060 - 16137100
Alignment:
| Q |
380 |
atgaccccaccaaaaggagttaatcattttttcaatttcat |
420 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||||||||||| |
|
|
| T |
16137060 |
atgaccccaccaaaatgcgttaagcattttttcaatttcat |
16137100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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